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INSTALL report for discordant on tokay1

This page was generated on 2019-04-13 11:27:29 -0400 (Sat, 13 Apr 2019).

Package 417/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
discordant 1.6.1
Charlotte Siska
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/discordant
Branch: RELEASE_3_8
Last Commit: d3336f0
Last Changed Date: 2019-01-04 13:29:49 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: discordant
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/discordant_1.6.1.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL discordant_1.6.1.zip && rm discordant_1.6.1.tar.gz discordant_1.6.1.zip
StartedAt: 2019-04-12 19:00:54 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:01:22 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 27.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/discordant_1.6.1.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL discordant_1.6.1.zip && rm discordant_1.6.1.tar.gz discordant_1.6.1.zip
###
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100  190k  100  190k    0     0  3023k      0 --:--:-- --:--:-- --:--:-- 3230k

install for i386

* installing *source* package 'discordant' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/discordant.buildbin-libdir/discordant/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'discordant'
    finding HTML links ... done
    TCGA_Breast_RNASeq                      html  
    TCGA_Breast_RNASeq_voom                 html  
    TCGA_Breast_miRNASeq                    html  
    TCGA_Breast_miRNASeq_voom               html  
    TCGA_GBM_miRNA_microarray               html  
    TCGA_GBM_transcript_microarray          html  
    createVectors                           html  
    discordantRun                           html  
    fishersTrans                            html  
    split.MADOutlier                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'discordant' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/discordant.buildbin-libdir/discordant/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'discordant' as discordant_1.6.1.zip
* DONE (discordant)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'discordant' successfully unpacked and MD5 sums checked
In R CMD INSTALL