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INSTALL report for dexus on tokay1

This page was generated on 2019-04-13 11:22:42 -0400 (Sat, 13 Apr 2019).

Package 404/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dexus 1.22.1
Guenter Klambauer
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/dexus
Branch: RELEASE_3_8
Last Commit: 36b7c42
Last Changed Date: 2019-01-04 13:29:35 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: dexus
Version: 1.22.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/dexus_1.22.1.tar.gz && rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dexus.buildbin-libdir dexus_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL dexus_1.22.1.zip && rm dexus_1.22.1.tar.gz dexus_1.22.1.zip
StartedAt: 2019-04-12 18:29:12 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:30:03 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 50.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/dexus_1.22.1.tar.gz && rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dexus.buildbin-libdir dexus_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL dexus_1.22.1.zip && rm dexus_1.22.1.tar.gz dexus_1.22.1.zip
###
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install for i386

* installing *source* package 'dexus' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dexus.cpp -o dexus.o
dexus.cpp: In function 'SEXPREC* dexus_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:193:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
  const double DEFAULT_R = 20; // R value used when re-setting clusters
               ^
dexus.cpp: In function 'SEXPREC* dexss_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:575:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
  const double DEFAULT_R = 20; // R value used when re-setting clusters
               ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o dexus.dll tmp.def dexus.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/dexus.buildbin-libdir/dexus/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'dexus'
    finding HTML links ... done
    DEXUSResult-class                       html  
    DEXUSResult-subset                      html  
    INI                                     html  
    INIThreshold-set                        html  
    accessors                               html  
    countsBottomly                          html  
    countsGilad                             html  
    countsLi                                html  
    countsMontgomery                        html  
    countsPickrell                          html  
    dexss                                   html  
    dexus                                   html  
    dexus.parallel                          html  
    getSizeNB                               html  
    normalizeData                           html  
    plot                                    html  
    sort                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'dexus' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dexus.cpp -o dexus.o
dexus.cpp: In function 'SEXPREC* dexus_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:193:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
  const double DEFAULT_R = 20; // R value used when re-setting clusters
               ^
dexus.cpp: In function 'SEXPREC* dexss_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:575:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
  const double DEFAULT_R = 20; // R value used when re-setting clusters
               ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o dexus.dll tmp.def dexus.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/dexus.buildbin-libdir/dexus/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'dexus' as dexus_1.22.1.zip
* DONE (dexus)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'dexus' successfully unpacked and MD5 sums checked
In R CMD INSTALL