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INSTALL report for derfinder on tokay1

This page was generated on 2019-04-13 11:24:24 -0400 (Sat, 13 Apr 2019).

Package 394/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
derfinder 1.16.1
Leonardo Collado-Torres
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/derfinder
Branch: RELEASE_3_8
Last Commit: fbc7300
Last Changed Date: 2018-12-03 16:40:56 -0400 (Mon, 03 Dec 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: derfinder
Version: 1.16.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/derfinder_1.16.1.tar.gz && rm -rf derfinder.buildbin-libdir && mkdir derfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=derfinder.buildbin-libdir derfinder_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL derfinder_1.16.1.zip && rm derfinder_1.16.1.tar.gz derfinder_1.16.1.zip
StartedAt: 2019-04-12 20:28:06 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:30:02 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 116.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/derfinder_1.16.1.tar.gz && rm -rf derfinder.buildbin-libdir && mkdir derfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=derfinder.buildbin-libdir derfinder_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL derfinder_1.16.1.zip && rm derfinder_1.16.1.tar.gz derfinder_1.16.1.zip
###
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install for i386

* installing *source* package 'derfinder' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'derfinder'
    finding HTML links ... done
    analyzeChr                              html  
    annotateRegions                         html  
    calculatePvalues                        html  
    calculateStats                          html  
    coerceGR                                html  
    collapseFullCoverage                    html  
    coverageToExon                          html  
    createBw                                html  
    createBwSample                          html  
    define_cluster                          html  
    derfinder-deprecated                    html  
    derfinder-package                       html  
    extendedMapSeqlevels                    html  
    filterData                              html  
    findRegions                             html  
    fullCoverage                            html  
    genomeData                              html  
    genomeDataRaw                           html  
    genomeFstats                            html  
    genomeInfo                              html  
    genomeRegions                           html  
    genomicState                            html  
    getRegionCoverage                       html  
    getTotalMapped                          html  
    loadCoverage                            html  
    makeGenomicState                        html  
    makeModels                              html  
    mergeResults                            html  
    preprocessCoverage                      html  
    railMatrix                              html  
    rawFiles                                html  
    regionMatrix                            html  
    sampleDepth                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'derfinder' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'derfinder' as derfinder_1.16.1.zip
* DONE (derfinder)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'derfinder' successfully unpacked and MD5 sums checked
In R CMD INSTALL