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INSTALL report for copynumber on tokay1

This page was generated on 2019-04-13 11:22:48 -0400 (Sat, 13 Apr 2019).

Package 326/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
copynumber 1.22.0
Gro Nilsen
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/copynumber
Branch: RELEASE_3_8
Last Commit: 9273073
Last Changed Date: 2018-10-30 11:41:51 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: copynumber
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/copynumber_1.22.0.tar.gz && rm -rf copynumber.buildbin-libdir && mkdir copynumber.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copynumber.buildbin-libdir copynumber_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL copynumber_1.22.0.zip && rm copynumber_1.22.0.tar.gz copynumber_1.22.0.zip
StartedAt: 2019-04-12 19:34:51 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:35:30 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 39.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/copynumber_1.22.0.tar.gz && rm -rf copynumber.buildbin-libdir && mkdir copynumber.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copynumber.buildbin-libdir copynumber_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL copynumber_1.22.0.zip && rm copynumber_1.22.0.tar.gz copynumber_1.22.0.zip
###
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100  770k  100  770k    0     0  16.4M      0 --:--:-- --:--:-- --:--:-- 17.9M

install for i386

* installing *source* package 'copynumber' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'copynumber'
    finding HTML links ... done
    SNPdata                                 html  
    aspcf                                   html  
    callAberrations                         html  
    getGRangesFormat                        html  
    imputeMissing                           html  
    interpolate.pcf                         html  
    lymphoma                                html  
    micma                                   html  
    multipcf                                html  
    pcf                                     html  
    pcfPlain                                html  
    plotAberration                          html  
    plotAllele                              html  
    plotChrom                               html  
    plotCircle                              html  
    plotFreq                                html  
    plotGamma                               html  
    plotGenome                              html  
    plotHeatmap                             html  
    plotSample                              html  
    selectSegments                          html  
    subsetData                              html  
    subsetSegments                          html  
    winsorize                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'copynumber' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'copynumber' as copynumber_1.22.0.zip
* DONE (copynumber)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'copynumber' successfully unpacked and MD5 sums checked
In R CMD INSTALL