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INSTALL report for TnT on tokay1

This page was generated on 2019-04-13 11:28:27 -0400 (Sat, 13 Apr 2019).

Package 1569/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TnT 1.4.0
Jialin Ma
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/TnT
Branch: RELEASE_3_8
Last Commit: d7d17ed
Last Changed Date: 2018-10-30 11:42:06 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TnT
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/TnT_1.4.0.tar.gz && rm -rf TnT.buildbin-libdir && mkdir TnT.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TnT.buildbin-libdir TnT_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL TnT_1.4.0.zip && rm TnT_1.4.0.tar.gz TnT_1.4.0.zip
StartedAt: 2019-04-12 19:37:07 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:37:38 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 30.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/TnT_1.4.0.tar.gz && rm -rf TnT.buildbin-libdir && mkdir TnT.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TnT.buildbin-libdir TnT_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL TnT_1.4.0.zip && rm TnT_1.4.0.tar.gz TnT_1.4.0.zip
###
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install for i386

* installing *source* package 'TnT' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TnT'
    finding HTML links ... done
    TnT-shiny                               html  
    composite-track                         html  
    knit_print.TnTBoard                     html  
    mapcol                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp2TghY5/R.INSTALL18fc7d386181/TnT/man/mapcol.Rd:13: file link 'terrain.colors' in package 'grDevices' does not exist and so has been treated as a topic
    range-TnTBoard-method                   html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp2TghY5/R.INSTALL18fc7d386181/TnT/man/range-TnTBoard-method.Rd:14: file link 'range,GenomicRanges-method' in package 'GenomicRanges' does not exist and so has been treated as a topic
    range-TnTTrack                          html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp2TghY5/R.INSTALL18fc7d386181/TnT/man/range-TnTTrack.Rd:19: file link 'range,GenomicRanges-method' in package 'GenomicRanges' does not exist and so has been treated as a topic
    saveTnT                                 html  
    seqinfo                                 html  
    strandlabel                             html  
    tntboard                                html  
    tooltip                                 html  
    track-constructors                      html  
    trackSpec                               html  
    trackWidget                             html  
    trackdata                               html  
    tracklist                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'TnT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TnT' as TnT_1.4.0.zip
* DONE (TnT)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'TnT' successfully unpacked and MD5 sums checked
In R CMD INSTALL