Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

BUILD BIN report for TSSi on tokay1

This page was generated on 2019-04-13 11:21:45 -0400 (Sat, 13 Apr 2019).

Package 1597/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TSSi 1.28.0
Julian Gehring
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/TSSi
Branch: RELEASE_3_8
Last Commit: 55b5404
Last Changed Date: 2018-10-30 11:41:47 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TSSi
Version: 1.28.0
Command: rm -rf TSSi.buildbin-libdir && mkdir TSSi.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TSSi.buildbin-libdir TSSi_1.28.0.tar.gz
StartedAt: 2019-04-13 08:02:53 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 08:03:13 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 20.0 seconds
RetCode: 0
Status:  OK  
PackageFile: TSSi_1.28.0.zip
PackageFileSize: 509.4 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TSSi.buildbin-libdir && mkdir TSSi.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TSSi.buildbin-libdir TSSi_1.28.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'TSSi' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c assess.c -o assess.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o TSSi.dll tmp.def assess.o init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/TSSi.buildbin-libdir/TSSi/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'segments' in package 'TSSi'
** help
*** installing help indices
  converting help for package 'TSSi'
    finding HTML links ... done
    TSSi-package                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TSSi-package.Rd:54: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TSSi-package.Rd:54: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TSSi-package.Rd:55: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TSSi-package.Rd:66: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    TssData-class                           html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssData-class.Rd:144: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssData-class.Rd:144: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssData-class.Rd:145: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssData-class.Rd:152: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    TssNorm-class                           html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssNorm-class.Rd:74: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssNorm-class.Rd:74: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssNorm-class.Rd:75: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssNorm-class.Rd:82: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    TssResult-class                         html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssResult-class.Rd:86: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssResult-class.Rd:86: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssResult-class.Rd:87: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/TssResult-class.Rd:94: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    asRangedData-methods                    html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/asRangedData-methods.Rd:89: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/asRangedData-methods.Rd:89: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/asRangedData-methods.Rd:90: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/asRangedData-methods.Rd:97: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    get-methods                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/get-methods.Rd:160: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/get-methods.Rd:160: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/get-methods.Rd:161: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/get-methods.Rd:168: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    identify-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/identify-methods.Rd:101: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/identify-methods.Rd:101: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/identify-methods.Rd:102: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/identify-methods.Rd:109: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    normalize-methods                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/normalize-methods.Rd:112: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/normalize-methods.Rd:112: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/normalize-methods.Rd:113: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/normalize-methods.Rd:120: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    physcoCounts-data                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/physcoCounts-data.Rd:49: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/physcoCounts-data.Rd:49: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/physcoCounts-data.Rd:50: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/physcoCounts-data.Rd:57: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    plot-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/plot-methods.Rd:154: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/plot-methods.Rd:154: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/plot-methods.Rd:155: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/plot-methods.Rd:162: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    segmentize-methods                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/segmentize-methods.Rd:91: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/segmentize-methods.Rd:91: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/segmentize-methods.Rd:92: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/segmentize-methods.Rd:99: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    subtract-functions                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/subtract-functions.Rd:50: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/subtract-functions.Rd:50: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/subtract-functions.Rd:51: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpcx3R4i/R.INSTALL3dd8617f5da9/TSSi/man/subtract-functions.Rd:58: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'TSSi' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c assess.c -o assess.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o TSSi.dll tmp.def assess.o init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/TSSi.buildbin-libdir/TSSi/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TSSi' as TSSi_1.28.0.zip
* DONE (TSSi)
In R CMD INSTALL
In R CMD INSTALL