Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for Sushi on tokay1

This page was generated on 2019-04-13 11:23:47 -0400 (Sat, 13 Apr 2019).

Package 1528/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Sushi 1.20.0
Douglas H Phanstiel
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/Sushi
Branch: RELEASE_3_8
Last Commit: fea3c6c
Last Changed Date: 2018-10-30 11:41:53 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: Sushi
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Sushi_1.20.0.tar.gz && rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sushi.buildbin-libdir Sushi_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Sushi_1.20.0.zip && rm Sushi_1.20.0.tar.gz Sushi_1.20.0.zip
StartedAt: 2019-04-12 19:27:14 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:28:17 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 62.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Sushi_1.20.0.tar.gz && rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sushi.buildbin-libdir Sushi_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Sushi_1.20.0.zip && rm Sushi_1.20.0.tar.gz Sushi_1.20.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 4022k  100 4022k    0     0  47.6M      0 --:--:-- --:--:-- --:--:-- 49.7M

install for i386

* installing *source* package 'Sushi' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Sushi'
    finding HTML links ... done
    SushiColors                             html  
    Sushi_5C.bedpe                          html  
    Sushi_ChIAPET_pol2.bedpe                html  
    Sushi_ChIPExo_CTCF.bedgraph             html  
    Sushi_ChIPSeq_CTCF.bedgraph             html  
    Sushi_ChIPSeq_pol2.bed                  html  
    Sushi_ChIPSeq_pol2.bedgraph             html  
    Sushi_ChIPSeq_severalfactors.bed        html  
    Sushi_DNaseI.bedgraph                   html  
    Sushi_GWAS.bed                          html  
    Sushi_HiC.matrix                        html  
    Sushi_RNASeq_K562.bedgraph              html  
    Sushi_genes.bed                         html  
    Sushi_hg18_genome                       html  
    Sushi_transcripts.bed                   html  
    addlegend                               html  
    chromOffsets                            html  
    convertstrandinfo                       html  
    labelgenome                             html  
    labelplot                               html  
    maptocolors                             html  
    maptolwd                                html  
    opaque                                  html  
    plotBed                                 html  
    plotBedgraph                            html  
    plotBedpe                               html  
    plotGenes                               html  
    finding level-2 HTML links ... done

    plotHic                                 html  
    plotManhattan                           html  
    sortChrom                               html  
    zoombox                                 html  
    zoomsregion                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'Sushi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Sushi' as Sushi_1.20.0.zip
* DONE (Sushi)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'Sushi' successfully unpacked and MD5 sums checked
In R CMD INSTALL