Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for SSPA on tokay1

This page was generated on 2019-04-13 11:20:56 -0400 (Sat, 13 Apr 2019).

Package 1509/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SSPA 2.22.1
Maarten van Iterson
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/SSPA
Branch: RELEASE_3_8
Last Commit: 2ece27d
Last Changed Date: 2019-01-04 13:51:40 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SSPA
Version: 2.22.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SSPA_2.22.1.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.22.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SSPA_2.22.1.zip && rm SSPA_2.22.1.tar.gz SSPA_2.22.1.zip
StartedAt: 2019-04-12 18:50:13 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:50:40 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 26.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SSPA_2.22.1.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.22.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SSPA_2.22.1.zip && rm SSPA_2.22.1.tar.gz SSPA_2.22.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  387k  100  387k    0     0  9197k      0 --:--:-- --:--:-- --:--:--  9.9M

install for i386

* installing *source* package 'SSPA' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
Rinit.c:12:1: warning: missing braces around initializer [-Wmissing-braces]
 };
 ^
Rinit.c:12:1: warning: (near initialization for 'cMethods[2]') [-Wmissing-braces]
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c massdist.c -o massdist.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c nncg.c -o nncg.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def Rinit.o massdist.o nncg.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SSPA'
    finding HTML links ... done
    Nutrigenomics                           html  
    dbitri                                  html  
    deepSAGE                                html  
    pbitri                                  html  
    pilotData                               html  
    plot-methods                            html  
    predictpower                            html  
    qbitri                                  html  
    rbitri                                  html  
    sampleSize                              html  
    show-methods                            html  
    simdat                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SSPA' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
Rinit.c:12:1: warning: missing braces around initializer [-Wmissing-braces]
 };
 ^
Rinit.c:12:1: warning: (near initialization for 'cMethods[2]') [-Wmissing-braces]
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c massdist.c -o massdist.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c nncg.c -o nncg.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def Rinit.o massdist.o nncg.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SSPA' as SSPA_2.22.1.zip
* DONE (SSPA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SSPA' successfully unpacked and MD5 sums checked
In R CMD INSTALL