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INSTALL report for SPONGE on tokay1

This page was generated on 2019-04-13 11:28:12 -0400 (Sat, 13 Apr 2019).

Package 1498/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SPONGE 1.4.0
Markus List
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/SPONGE
Branch: RELEASE_3_8
Last Commit: 4123d4f
Last Changed Date: 2018-10-30 11:42:06 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SPONGE
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SPONGE_1.4.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.4.0.zip && rm SPONGE_1.4.0.tar.gz SPONGE_1.4.0.zip
StartedAt: 2019-04-12 20:28:46 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:29:46 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 60.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SPONGE_1.4.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.4.0.zip && rm SPONGE_1.4.0.tar.gz SPONGE_1.4.0.zip
###
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100 4102k  100 4102k    0     0  36.3M      0 --:--:-- --:--:-- --:--:-- 37.7M

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SPONGE'
    finding HTML links ... done
    ceRNA_interactions                      html  
    check_and_convert_expression_data       html  
    fn_elasticnet                           html  
    fn_gene_miRNA_F_test                    html  
    fn_get_model_coef                       html  
    fn_get_rss                              html  
    fn_get_shared_miRNAs                    html  
    gene_expr                               html  
    genes_pairwise_combinations             html  
    mir_expr                                html  
    mir_interactions                        html  
    mircode_ensg                            html  
    mircode_symbol                          html  
    precomputed_cov_matrices                html  
    precomputed_null_model                  html  
    sample_zero_mscor_cov                   html  
    sample_zero_mscor_data                  html  
    sponge                                  html  
    sponge_build_null_model                 html  
    sponge_compute_p_values                 html  
    sponge_edge_centralities                html  
    sponge_gene_miRNA_interaction_filter    html  
    sponge_network                          html  
    sponge_node_centralities                html  
    sponge_plot_network                     html  
    sponge_plot_network_centralities        html  
    sponge_plot_simulation_results          html  
    sponge_run_benchmark                    html  
    sponge_subsampling                      html  
    targetscan_ensg                         html  
    targetscan_symbol                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SPONGE' as SPONGE_1.4.0.zip
* DONE (SPONGE)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SPONGE' successfully unpacked and MD5 sums checked
In R CMD INSTALL