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INSTALL report for SNPhood on tokay1

This page was generated on 2019-04-13 11:26:02 -0400 (Sat, 13 Apr 2019).

Package 1475/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPhood 1.12.0
Christian Arnold
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/SNPhood
Branch: RELEASE_3_8
Last Commit: f6e5f8e
Last Changed Date: 2018-10-30 11:41:59 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SNPhood
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SNPhood_1.12.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.12.0.zip && rm SNPhood_1.12.0.tar.gz SNPhood_1.12.0.zip
StartedAt: 2019-04-12 20:14:06 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:15:22 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 75.7 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SNPhood_1.12.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.12.0.zip && rm SNPhood_1.12.0.tar.gz SNPhood_1.12.0.zip
###
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install for i386

* installing *source* package 'SNPhood' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SNPhood'
    finding HTML links ... done
    SNPhood-class                           html  
    SNPhood                                 html  
    SNPhood.o                               html  
    analyzeSNPhood                          html  
    finding level-2 HTML links ... done

    annotation-methods                      html  
    annotationBins                          html  
    annotationBins2                         html  
    annotationDatasets                      html  
    annotationReadGroups                    html  
    annotationRegions                       html  
    associateGenotypes                      html  
    bins-methods                            html  
    changeObjectIntegrityChecking           html  
    collectFiles                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpAJhtPr/R.INSTALL25c8729b26ec/SNPhood/man/collectFiles.Rd:46: file link 'path' in package 'Rsamtools' does not exist and so has been treated as a topic
    convertToAllelicFractions               html  
    counts-method                           html  
    datasets-methods                        html  
    deleteDatasets                          html  
    deleteReadGroups                        html  
    deleteRegions                           html  
    enrichment-methods                      html  
    getDefaultParameterList                 html  
    mergeReadGroups                         html  
    parameters-methods                      html  
    plotAllelicBiasResults                  html  
    plotAllelicBiasResultsOverview          html  
    plotAndCalculateCorrelationDatasets     html  
    plotAndCalculateWeakAndStrongGenotype   html  
    plotAndClusterMatrix                    html  
    plotAndSummarizeAllelicBiasTest         html  
    plotBinCounts                           html  
    plotClusterAverage                      html  
    plotFDRResults                          html  
    plotGenotypesPerCluster                 html  
    plotGenotypesPerSNP                     html  
    plotRegionCounts                        html  
    readGroups-methods                      html  
    regions-methods                         html  
    renameBins                              html  
    renameDatasets                          html  
    renameReadGroups                        html  
    renameRegions                           html  
    results                                 html  
    testForAllelicBiases                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SNPhood' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPhood' as SNPhood_1.12.0.zip
* DONE (SNPhood)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SNPhood' successfully unpacked and MD5 sums checked
In R CMD INSTALL