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INSTALL report for SIM on tokay1

This page was generated on 2019-04-13 11:20:44 -0400 (Sat, 13 Apr 2019).

Package 1448/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIM 1.52.0
Renee X. de Menezes
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/SIM
Branch: RELEASE_3_8
Last Commit: 0d16b7e
Last Changed Date: 2018-10-30 11:41:44 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SIM
Version: 1.52.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SIM_1.52.0.tar.gz && rm -rf SIM.buildbin-libdir && mkdir SIM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIM.buildbin-libdir SIM_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SIM_1.52.0.zip && rm SIM_1.52.0.tar.gz SIM_1.52.0.zip
StartedAt: 2019-04-12 18:52:32 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:53:23 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 51.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SIM_1.52.0.tar.gz && rm -rf SIM.buildbin-libdir && mkdir SIM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIM.buildbin-libdir SIM_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SIM_1.52.0.zip && rm SIM_1.52.0.tar.gz SIM_1.52.0.zip
###
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100  269k  100  269k    0     0  7234k      0 --:--:-- --:--:-- --:--:-- 7918k

install for i386

* installing *source* package 'SIM' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c withinWindow.c -o withinWindow.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SIM.dll tmp.def withinWindow.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SIM.buildbin-libdir/SIM/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SIM'
    finding HTML links ... done
    RESOURCERER.annotation.to.ID            html  
    SIM-package                             html  
    acgh.data                               html  
    assemble.data                           html  
    chrom.table                             html  
    expr.data                               html  
    getoverlappingregions                   html  
    impute.nas.by.surrounding               html  
    integrated.analysis                     html  
    link.metadata                           html  
    samples                                 html  
    sim.plot.overlapping.indep.dep.features
                                            html  
    sim.plot.pvals.on.genome                html  
    sim.plot.pvals.on.region                html  
    sim.plot.zoom.in                        html  
    sim.plot.zscore.heatmap                 html  
    sim.update.chrom.table                  html  
    tabulate.pvals                          html  
    tabulate.top.dep.features               html  
    tabulate.top.indep.features             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SIM' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c withinWindow.c -o withinWindow.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SIM.dll tmp.def withinWindow.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SIM.buildbin-libdir/SIM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SIM' as SIM_1.52.0.zip
* DONE (SIM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SIM' successfully unpacked and MD5 sums checked
In R CMD INSTALL