Package: PepsNMR

Version: 1.0.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.0.2.tar.gz

StartedAt: 2019-04-16 01:51:24 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 01:56:33 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 309.5 seconds

RetCode: 0

Status:  OK

CheckDir: PepsNMR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.0.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/PepsNMR.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
PEPSNMR-package    89.786 22.320 112.897
PreprocessingChain 84.294 21.954 106.947
Warping            14.550  3.603  18.227
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PepsNMR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘PepsNMR’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PepsNMR)

name	user	system	elapsed
Apodization	0.559	0.081	0.646
BaselineCorrection	0.513	0.146	0.665
Bucketing	0.086	0.005	0.090
Draw	1.566	0.070	1.646
DrawPCA	0.788	0.017	0.805
DrawSignal	0.837	0.013	0.854
FirstOrderPhaseCorrection	0.049	0.008	0.057
FourierTransform	0.037	0.012	0.050
GroupDelayCorrection	0.059	0.012	0.071
InternalReferencing	0.036	0.010	0.045
NegativeValuesZeroing	0.014	0.004	0.018
Normalization	0.007	0.001	0.008
PEPSNMR-package	89.786	22.320	112.897
PreprocessingChain	84.294	21.954	106.947
ReadFids	0.367	0.100	0.470
RegionRemoval	0.009	0.001	0.009
SolventSuppression	0.120	0.043	0.165
Warping	14.550	3.603	18.227
WindowSelection	0.047	0.007	0.053
ZeroOrderPhaseCorrection	0.103	0.061	0.166
ZoneAggregation	0.346	0.077	0.427