Sebastian Gibb
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/Pbase |
| Branch: RELEASE_3_8 |
| Last Commit: 6ef1b9f |
| Last Changed Date: 2019-01-04 13:43:39 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:23:59 -0400 (Sat, 13 Apr 2019).
| Package 1130/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Pbase 0.22.1 Sebastian Gibb
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Pbase |
| Version: 0.22.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Pbase_0.22.1.tar.gz && rm -rf Pbase.buildbin-libdir && mkdir Pbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pbase.buildbin-libdir Pbase_0.22.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Pbase_0.22.1.zip && rm Pbase_0.22.1.tar.gz Pbase_0.22.1.zip |
| StartedAt: 2019-04-12 20:26:45 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:27:58 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 73.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Pbase_0.22.1.tar.gz && rm -rf Pbase.buildbin-libdir && mkdir Pbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pbase.buildbin-libdir Pbase_0.22.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Pbase_0.22.1.zip && rm Pbase_0.22.1.tar.gz Pbase_0.22.1.zip
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install for i386
* installing *source* package 'Pbase' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Pbase'
finding HTML links ... done
Pparams-class html
Proteins-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaU6Ddp/R.INSTALL9b42dc75937/Pbase/man/Proteins-class.Rd:121: file link 'proteins' in package 'ensembldb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaU6Ddp/R.INSTALL9b42dc75937/Pbase/man/Proteins-class.Rd:126: file link 'listColumns' in package 'ensembldb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaU6Ddp/R.INSTALL9b42dc75937/Pbase/man/Proteins-class.Rd:232: file link 'cleave' in package 'cleaver' does not exist and so has been treated as a topic
calculateHeavyLabels html
coordinate-mapping-methods html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaU6Ddp/R.INSTALL9b42dc75937/Pbase/man/coordinate-mapping-methods.Rd:124: file link 'mapToAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaU6Ddp/R.INSTALL9b42dc75937/Pbase/man/coordinate-mapping-methods.Rd:129: file link 'mapToTranscripts' in package 'GenomicFeatures' does not exist and so has been treated as a topic
etrid2grl html
isReverse html
p html
plotAsAnnotationTrack html
proteinCoding-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Pbase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Pbase' as Pbase_0.22.1.zip
* DONE (Pbase)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'Pbase' successfully unpacked and MD5 sums checked
In R CMD INSTALL