Matthew Page
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/PCAN |
| Branch: RELEASE_3_8 |
| Last Commit: f18fc3e |
| Last Changed Date: 2018-10-30 11:42:00 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:59:24 -0400 (Tue, 16 Apr 2019).
| Package 1135/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PCAN 1.10.0 Matthew Page
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: PCAN |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PCAN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PCAN_1.10.0.tar.gz |
| StartedAt: 2019-04-16 01:49:42 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 01:55:25 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 342.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PCAN.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PCAN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PCAN_1.10.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/PCAN.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PCAN/DESCRIPTION’ ... OK
* this is package ‘PCAN’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PCAN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
compareHPSets 81.882 10.218 93.268
hpGeneListComp 76.788 10.379 87.801
hpGeneHeatmap 76.942 9.910 87.550
traitDef 4.799 0.302 5.140
hpByTrait 4.833 0.239 5.129
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PCAN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PCAN ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘PCAN’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (PCAN)
PCAN.Rcheck/PCAN-Ex.timings
| name | user | system | elapsed | |
| calcHpSim | 3.209 | 0.271 | 3.522 | |
| compareHPSets | 81.882 | 10.218 | 93.268 | |
| computeHpIC | 2.887 | 0.139 | 3.046 | |
| geneByHp | 2.875 | 0.131 | 3.027 | |
| geneByTrait | 0.060 | 0.007 | 0.066 | |
| geneDef | 4.619 | 0.238 | 4.889 | |
| hpByTrait | 4.833 | 0.239 | 5.129 | |
| hpDef | 3.142 | 0.133 | 3.310 | |
| hpGeneHeatmap | 76.942 | 9.910 | 87.550 | |
| hpGeneListComp | 76.788 | 10.379 | 87.801 | |
| hpSetCompBestMatch | 4.465 | 0.320 | 4.826 | |
| hpSetCompSummary | 4.653 | 0.289 | 4.955 | |
| hp_ancestors | 3.101 | 0.180 | 3.293 | |
| hp_class | 0.059 | 0.009 | 0.068 | |
| hp_descendants | 2.919 | 0.154 | 3.101 | |
| hqStrNw | 0 | 0 | 0 | |
| hsEntrezByRPath | 0 | 0 | 0 | |
| rPath | 0.000 | 0.001 | 0.000 | |
| traitDef | 4.799 | 0.302 | 5.140 | |