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INSTALL report for MEDME on tokay1

This page was generated on 2019-04-13 11:20:48 -0400 (Sat, 13 Apr 2019).

Package 906/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MEDME 1.42.0
Mattia Pelizzola
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/MEDME
Branch: RELEASE_3_8
Last Commit: 13a76f9
Last Changed Date: 2018-10-30 11:41:44 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: MEDME
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/MEDME_1.42.0.tar.gz && rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEDME.buildbin-libdir MEDME_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL MEDME_1.42.0.zip && rm MEDME_1.42.0.tar.gz MEDME_1.42.0.zip
StartedAt: 2019-04-12 19:51:52 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:52:24 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 32.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/MEDME_1.42.0.tar.gz && rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEDME.buildbin-libdir MEDME_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL MEDME_1.42.0.zip && rm MEDME_1.42.0.tar.gz MEDME_1.42.0.zip
###
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100  266k  100  266k    0     0  7156k      0 --:--:-- --:--:-- --:--:-- 8072k

install for i386

* installing *source* package 'MEDME' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:77:33: warning: 'weight' may be used uninitialized in this function [-Wmaybe-uninitialized]
  MeDIPsum = MeDIPsum + MeDIP[j] * weight;
                                 ^
MEDMEweight.c:91:42: warning: 'Max' may be used uninitialized in this function [-Wmaybe-uninitialized]
       if(AMSfinal[i] > Max) {AMSfinal[i] = Max;}
                                          ^
MEDMEweight.c:92:42: warning: 'Min' may be used uninitialized in this function [-Wmaybe-uninitialized]
       if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
                                          ^
MEDMEweight.c:90:33: warning: 'E' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                 ^
MEDMEweight.c:90:47: warning: 'D' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                               ^
MEDMEweight.c:90:63: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                                               ^
MEDMEweight.c:90:33: warning: 'B' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                 ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o MEDME.dll tmp.def MEDMEweight.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/MEDME.buildbin-libdir/MEDME/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MEDME'
    finding HTML links ... done
    CGcount                                 html  
    MEDME                                   html  
    MEDME.predict                           html  
    MEDME.readFiles                         html  
    MEDME.writeFiles                        html  
    MEDMEset-class                          html  
    smooth                                  html  
    testMEDMEset                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'MEDME' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:78:12: warning: 'weight' may be used uninitialized in this function [-Wmaybe-uninitialized]
  weightSum = weightSum + weight; 
            ^
MEDMEweight.c:91:9: warning: 'Max' may be used uninitialized in this function [-Wmaybe-uninitialized]
       if(AMSfinal[i] > Max) {AMSfinal[i] = Max;}
         ^
MEDMEweight.c:92:42: warning: 'Min' may be used uninitialized in this function [-Wmaybe-uninitialized]
       if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
                                          ^
MEDMEweight.c:90:33: warning: 'E' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                 ^
MEDMEweight.c:90:47: warning: 'D' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                               ^
MEDMEweight.c:90:63: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                                               ^
MEDMEweight.c:90:33: warning: 'B' may be used uninitialized in this function [-Wmaybe-uninitialized]
       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
                                 ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o MEDME.dll tmp.def MEDMEweight.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/MEDME.buildbin-libdir/MEDME/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDME' as MEDME_1.42.0.zip
* DONE (MEDME)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'MEDME' successfully unpacked and MD5 sums checked
In R CMD INSTALL