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INSTALL report for MAST on tokay1

This page was generated on 2019-04-13 11:27:11 -0400 (Sat, 13 Apr 2019).

Package 885/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAST 1.8.2
Andrew McDavid
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/MAST
Branch: RELEASE_3_8
Last Commit: 7ae6306
Last Changed Date: 2019-01-16 08:49:30 -0400 (Wed, 16 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MAST
Version: 1.8.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/MAST_1.8.2.tar.gz && rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.8.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL MAST_1.8.2.zip && rm MAST_1.8.2.tar.gz MAST_1.8.2.zip
StartedAt: 2019-04-12 20:07:04 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:08:18 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 74.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/MAST_1.8.2.tar.gz && rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.8.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL MAST_1.8.2.zip && rm MAST_1.8.2.tar.gz MAST_1.8.2.zip
###
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install for i386

* installing *source* package 'MAST' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MAST'
    finding HTML links ... done
    BayesGLMlike-class                      html  
    Drop                                    html  
    FromFlatDF                              html  
    FromMatrix                              html  
    GLMlike-class                           html  
    GSEATests-class                         html  
    Hypothesis                              html  
    LMERlike-class                          html  
    LMlike-class                            html  
    LRT                                     html  
    MAST-package                            html  
    SceToSingleCellAssay                    html  
    ZlmFit-class                            html  
    applyFlat                               html  
    bootVcov1                               html  
    cData                                   html  
    finding level-2 HTML links ... done

    calcZ                                   html  
    colData-set-SingleCellAssay-DataFrame-method
                                            html  
    collectResiduals                        html  
    computeEtFromCt                         html  
    convertMASTClassicToSingleCellAssay     html  
    defaultAssay                            html  
    defaultPrior                            html  
    dof                                     html  
    ebayes                                  html  
    expavg                                  html  
    fData-methods                           html  
    featureData-methods                     html  
    filterLowExpressedGenes                 html  
    fit                                     html  
    freq                                    html  
    getConcordance                          html  
    getwellKey                              html  
    gseaAfterBoot                           html  
    hushWarning                             html  
    impute                                  html  
    influence.bayesglm                      html  
    invlogit                                html  
    logFC                                   html  
    logmean                                 html  
    lrTest-ZlmFit-character-method          html  
    lrTest                                  html  
    maits-dataset                           html  
    mast_filter                             html  
    melt.SingleCellAssay                    html  
    model.matrix-set                        html  
    model.matrix                            html  
    myBiplot                                html  
    pbootVcov1                              html  
    plot.thresholdSCRNACountMatrix          html  
    plotSCAConcordance                      html  
    plotlrt                                 html  
    predict.ZlmFit                          html  
    primerAverage                           html  
    print.summaryZlmFit                     html  
    read.fluidigm                           html  
    removeResponse                          html  
    rstandard.bayesglm                      html  
    se.coef                                 html  
    show                                    html  
    split-SingleCellAssay-character-method
                                            html  
    stat_ell                                html  
    subset-SingleCellAssay-method           html  
    summarize                               html  
    summary-GSEATests-method                html  
    summary-ZlmFit-method                   html  
    summary.thresholdSCRNACountMatrix       html  
    thresholdSCRNACountMatrix               html  
    vbeta-dataset                           html  
    vbetaFA-dataset                         html  
    waldTest-ZlmFit-matrix-method           html  
    waldTest                                html  
    xform                                   html  
    zlm                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'MAST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MAST' as MAST_1.8.2.zip
* DONE (MAST)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'MAST' successfully unpacked and MD5 sums checked
In R CMD INSTALL