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INSTALL report for LOBSTAHS on tokay1

This page was generated on 2019-04-13 11:26:53 -0400 (Sat, 13 Apr 2019).

Package 840/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LOBSTAHS 1.8.1
James Collins
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/LOBSTAHS
Branch: RELEASE_3_8
Last Commit: 8b1c0d4
Last Changed Date: 2019-01-04 13:37:08 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: LOBSTAHS
Version: 1.8.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/LOBSTAHS_1.8.1.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.8.1.zip && rm LOBSTAHS_1.8.1.tar.gz LOBSTAHS_1.8.1.zip
StartedAt: 2019-04-12 20:04:43 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:05:42 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 59.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/LOBSTAHS_1.8.1.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.8.1.zip && rm LOBSTAHS_1.8.1.tar.gz LOBSTAHS_1.8.1.zip
###
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100 2702k  100 2702k    0     0  28.7M      0 --:--:-- --:--:-- --:--:-- 29.9M

install for i386

* installing *source* package 'LOBSTAHS' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LOBSTAHS'
    finding HTML links ... done
    LOBSet-class                            html  
    finding level-2 HTML links ... done

    LOBSet                                  html  
    LOBdbase-class                          html  
    LOBdbase                                html  
    LOBdefaults                             html  
    doLOBscreen                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGA90xV/R.INSTALLe10189f31c0/LOBSTAHS/man/doLOBscreen.Rd:20: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGA90xV/R.INSTALLe10189f31c0/LOBSTAHS/man/doLOBscreen.Rd:41: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGA90xV/R.INSTALLe10189f31c0/LOBSTAHS/man/doLOBscreen.Rd:125: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic
    exportDBtoCSV                           html  
    extractLOBdbasedata                     html  
    generateLOBdbase                        html  
    getLOBpeaklist                          html  
    loadLOBdbase                            html  
** building package indices
** installing vignettes
   'LOBSTAHS.Rmd' using 'UTF-8' 
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'LOBSTAHS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LOBSTAHS' as LOBSTAHS_1.8.1.zip
* DONE (LOBSTAHS)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'LOBSTAHS' successfully unpacked and MD5 sums checked
In R CMD INSTALL