Back to Multiple platform build/check report for BioC 3.8
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

BUILD BIN report for GenoGAM on tokay1

This page was generated on 2019-04-13 11:26:33 -0400 (Sat, 13 Apr 2019).

Package 617/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenoGAM 2.0.3
Georg Stricker
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/GenoGAM
Branch: RELEASE_3_8
Last Commit: bb9cd4a
Last Changed Date: 2019-03-19 18:01:09 -0400 (Tue, 19 Mar 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenoGAM
Version: 2.0.3
Command: rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_2.0.3.tar.gz
StartedAt: 2019-04-13 07:18:34 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 07:19:53 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 79.2 seconds
RetCode: 0
Status:  OK  
PackageFile: GenoGAM_2.0.3.zip
PackageFileSize: 5.226 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_2.0.3.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'GenoGAM' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c matrixMult.cpp -o matrixMult.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GenoGAM.dll tmp.def RcppExports.o matrixMult.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenoGAM'
    finding HTML links ... done
    Coordinates-class                       html  
    GenoGAM-class                           html  
    GenoGAM                                 html  
    GenoGAMDataSet-class                    html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp82Aj7S/R.INSTALL3be0394eb89/GenoGAM/man/GenoGAMDataSet-class.Rd:139: file link 'GenoGAMSettings' in package 'GenoGAM' does not exist and so has been treated as a topic
    GenoGAMDataSet-metrics                  html  
    GenoGAMDataSet-subsetting               html  
    GenoGAMDataSetList-class                html  
    GenoGAMDataSetList-metrics              html  
    GenoGAMDataSetList-subsetting           html  
    GenoGAMFamily-class                     html  
    GenoGAMList-class                       html  
    GenoGAMList-subsetting                  html  
    GenoGAMSettings-class                   html  
    asCoordinates                           html  
    callPeaks                               html  
    computeRegionSignificance               html  
    computeSignificance                     html  
    computeSizeFactors                      html  
    fitGenoGAM                              html  
    makeTestGenoGAM                         html  
    makeTestGenoGAMDataSet                  html  
    makeTestGenoGAMDataSetList              html  
    makeTestGenoGAMList                     html  
    plotGenoGAM                             html  
    readData                                html  
    writeToBEDFile                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenoGAM' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c matrixMult.cpp -o matrixMult.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GenoGAM.dll tmp.def RcppExports.o matrixMult.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenoGAM' as GenoGAM_2.0.3.zip
* DONE (GenoGAM)
In R CMD INSTALL
In R CMD INSTALL