Back to Multiple platform build/check report for BioC 3.8
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GSVA on merida1

This page was generated on 2019-04-16 11:55:33 -0400 (Tue, 16 Apr 2019).

Package 697/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSVA 1.30.0
Justin Guinney
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/GSVA
Branch: RELEASE_3_8
Last Commit: 7296f48
Last Changed Date: 2018-10-30 11:41:47 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GSVA
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GSVA
StartedAt: 2019-04-15 18:08:35 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 18:09:04 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 29.1 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GSVA
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘GSVA’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c kernel_estimation.c -o kernel_estimation.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ks_test.c -o ks_test.o
ks_test.c:24:9: warning: unused variable 'mx_value' [-Wunused-variable]
        double mx_value = 0.0;
               ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c register_cmethods.c -o register_cmethods.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GSVA.so kernel_estimation.o ks_test.o register_cmethods.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/GSVA/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSVA)