Back to Multiple platform build/check report for BioC 3.8
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

BUILD BIN report for GOSim on tokay1

This page was generated on 2019-04-13 11:23:13 -0400 (Sat, 13 Apr 2019).

Package 667/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOSim 1.20.0
Holger Froehlich
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/GOSim
Branch: RELEASE_3_8
Last Commit: b83ce5e
Last Changed Date: 2018-10-30 11:41:52 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GOSim
Version: 1.20.0
Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.20.0.tar.gz
StartedAt: 2019-04-13 07:20:47 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 07:21:17 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 30.4 seconds
RetCode: 0
Status:  OK  
PackageFile: GOSim_1.20.0.zip
PackageFileSize: 1018 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.20.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'GOSim' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"`   -O2 -Wall  -mtune=generic -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GOSim.buildbin-libdir/GOSim/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GOSim'
    finding HTML links ... done
    GOenrichment                            html  
    IC                                      html  
    calc.diffusion.kernel                   html  
    calcICs                                 html  
    evaluateClustering                      html  
    filterGO                                html  
    getAncestors                            html  
    getChildren                             html  
    getDisjCommAnc                          html  
    getGOGraph                              html  
    getGOInfo                               html  
    getGeneFeatures                         html  
    getGeneFeaturesPrototypes               html  
    getGeneSim                              html  
    getGeneSimPrototypes                    html  
    getMinimumSubsumer                      html  
    getOffsprings                           html  
    getParents                              html  
    getTermSim                              html  
    internal                                html  
    selectPrototypes                        html  
    setEnrichmentFactors                    html  
    setEvidenceLevel                        html  
    setOntology                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GOSim' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"`   -O2 -Wall  -mtune=generic -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GOSim.buildbin-libdir/GOSim/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOSim' as GOSim_1.20.0.zip
* DONE (GOSim)
In R CMD INSTALL
In R CMD INSTALL