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INSTALL report for FlowSOM on tokay1

This page was generated on 2019-04-13 11:24:43 -0400 (Sat, 13 Apr 2019).

Package 546/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FlowSOM 1.14.1
Sofie Van Gassen
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/FlowSOM
Branch: RELEASE_3_8
Last Commit: 9c69691
Last Changed Date: 2019-01-04 13:32:51 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: FlowSOM
Version: 1.14.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/FlowSOM_1.14.1.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL FlowSOM_1.14.1.zip && rm FlowSOM_1.14.1.tar.gz FlowSOM_1.14.1.zip
StartedAt: 2019-04-12 19:07:16 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:08:03 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 46.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/FlowSOM_1.14.1.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL FlowSOM_1.14.1.zip && rm FlowSOM_1.14.1.tar.gz FlowSOM_1.14.1.zip
###
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100 1138k  100 1138k    0     0  24.8M      0 --:--:-- --:--:-- --:--:-- 27.1M

install for i386

* installing *source* package 'FlowSOM' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c som.c -o som.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/FlowSOM.buildbin-libdir/FlowSOM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FlowSOM'
    finding HTML links ... done
    AddFlowFrame                            html  
    AggregateFlowFrames                     html  
    BuildMST                                html  
    BuildSOM                                html  
    CountGroups                             html  
    Dist.MST                                html  
    FMeasure                                html  
    FlowSOM                                 html  
    FlowSOMSubset                           html  
    Initialize                              html  
    MapDataToCodes                          html  
    MetaClustering                          html  
    NewData                                 html  
    PlotCenters                             html  
    PlotClusters2D                          html  
    PlotGroups                              html  
    PlotMarker                              html  
    PlotNode                                html  
    PlotNumbers                             html  
    PlotPies                                html  
    PlotStars                               html  
    PlotVariable                            html  
    ProcessGatingML                         html  
    finding level-2 HTML links ... done

    Purity                                  html  
    QueryStarPlot                           html  
    ReadInput                               html  
    SOM                                     html  
    SaveClustersToFCS                       html  
    UpdateNodeSize                          html  
    computeBackgroundColor                  html  
    metaClustering_consensus                html  
    plotStarLegend                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'FlowSOM' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c som.c -o som.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/FlowSOM.buildbin-libdir/FlowSOM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FlowSOM' as FlowSOM_1.14.1.zip
* DONE (FlowSOM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'FlowSOM' successfully unpacked and MD5 sums checked
In R CMD INSTALL