Back to Multiple platform build/check report for BioC 3.8
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for FastqCleaner on merida1

This page was generated on 2019-04-16 12:10:08 -0400 (Tue, 16 Apr 2019).

Package 507/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FastqCleaner 1.0.0
Leandro Roser
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/FastqCleaner
Branch: RELEASE_3_8
Last Commit: f86fbf1
Last Changed Date: 2018-10-30 11:42:09 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: FastqCleaner
Version: 1.0.0
Command: rm -rf FastqCleaner.buildbin-libdir && mkdir FastqCleaner.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FastqCleaner_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FastqCleaner.buildbin-libdir
StartedAt: 2019-04-16 04:02:09 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:02:56 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 46.9 seconds
RetCode: 0
Status:  OK 
PackageFile: FastqCleaner_1.0.0.tgz
PackageFileSize: 2.627 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf FastqCleaner.buildbin-libdir && mkdir FastqCleaner.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FastqCleaner_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FastqCleaner.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FastqCleaner.buildbin-libdir FastqCleaner_1.0.0.tar.gz'
>>>>>>> 

* installing *source* package ‘FastqCleaner’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c cpp_GC_content.cpp -o cpp_GC_content.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c cpp_base_content.cpp -o cpp_base_content.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c cpp_check_quality_threshold.cpp -o cpp_check_quality_threshold.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c cpp_create_stringvec.cpp -o cpp_create_stringvec.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c cpp_which_true.cpp -o cpp_which_true.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o FastqCleaner.so RcppExports.o cpp_GC_content.o cpp_base_content.o cpp_check_quality_threshold.o cpp_create_stringvec.o cpp_which_true.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/FastqCleaner.buildbin-libdir/FastqCleaner/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FastqCleaner)


>>>>>>> 
>>>>>>> FIXING LINKS FOR FastqCleaner.buildbin-libdir/FastqCleaner/libs//FastqCleaner.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs//FastqCleaner.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs//FastqCleaner.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs//FastqCleaner.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs//FastqCleaner.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs//FastqCleaner.so"