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INSTALL report for EnrichedHeatmap on tokay1

This page was generated on 2019-04-13 11:25:55 -0400 (Sat, 13 Apr 2019).

Package 471/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EnrichedHeatmap 1.12.0
Zuguang Gu
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/EnrichedHeatmap
Branch: RELEASE_3_8
Last Commit: 4deed55
Last Changed Date: 2018-10-30 11:41:59 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: EnrichedHeatmap
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/EnrichedHeatmap_1.12.0.tar.gz && rm -rf EnrichedHeatmap.buildbin-libdir && mkdir EnrichedHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL EnrichedHeatmap_1.12.0.zip && rm EnrichedHeatmap_1.12.0.tar.gz EnrichedHeatmap_1.12.0.zip
StartedAt: 2019-04-12 20:26:32 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:27:23 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 50.8 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/EnrichedHeatmap_1.12.0.tar.gz && rm -rf EnrichedHeatmap.buildbin-libdir && mkdir EnrichedHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL EnrichedHeatmap_1.12.0.zip && rm EnrichedHeatmap_1.12.0.tar.gz EnrichedHeatmap_1.12.0.zip
###
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install for i386

* installing *source* package 'EnrichedHeatmap' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dist_by_closeness.cpp -o dist_by_closeness.o
dist_by_closeness.cpp: In function 'float closeness(Rcpp::NumericVector, Rcpp::NumericVector)':
dist_by_closeness.cpp:12:27: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
    if(std::abs(x1[i] - 0) < 1e-6 | std::abs(x2[j] - 0) < 1e-6) {
                           ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o EnrichedHeatmap.dll tmp.def RcppExports.o dist_by_closeness.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/EnrichedHeatmap.buildbin-libdir/EnrichedHeatmap/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EnrichedHeatmap'
    finding HTML links ... done
    EnrichedHeatmap-class                   html  
    EnrichedHeatmap                         html  
    EnrichedHeatmapList-class               html  
    EnrichedHeatmapList                     html  
    Extract.normalizedMatrix                html  
    add.AdditiveUnit                        html  
    finding level-2 HTML links ... done

    anno_enriched                           html  
    as.normalizedMatrix                     html  
    copyAttr                                html  
    default_smooth_fun                      html  
    discretize                              html  
    dist_by_closeness                       html  
    draw-EnrichedHeatmap-method             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmap-method.rd:16: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
    draw-EnrichedHeatmapList-method         html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:18: file link 'make_layout' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:18: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:22: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
    draw-dispatch                           html  
    enriched_score                          html  
    extract_anno_enriched                   html  
    getSignalsFromList                      html  
    makeWindows                             html  
    normalizeToMatrix                       html  
    print.normalizedMatrix                  html  
    rbind.normalizedMatrix                  html  
    show-EnrichedHeatmap-method             html  
    show-EnrichedHeatmapList-method         html  
    show-dispatch                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'EnrichedHeatmap' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dist_by_closeness.cpp -o dist_by_closeness.o
dist_by_closeness.cpp: In function 'float closeness(Rcpp::NumericVector, Rcpp::NumericVector)':
dist_by_closeness.cpp:12:27: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
    if(std::abs(x1[i] - 0) < 1e-6 | std::abs(x2[j] - 0) < 1e-6) {
                           ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o EnrichedHeatmap.dll tmp.def RcppExports.o dist_by_closeness.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/EnrichedHeatmap.buildbin-libdir/EnrichedHeatmap/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EnrichedHeatmap' as EnrichedHeatmap_1.12.0.zip
* DONE (EnrichedHeatmap)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'EnrichedHeatmap' successfully unpacked and MD5 sums checked
In R CMD INSTALL