Back to Multiple platform build/check report for BioC 3.8
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for Doscheda on tokay1

This page was generated on 2019-04-13 11:28:11 -0400 (Sat, 13 Apr 2019).

Package 431/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Doscheda 1.4.1
Bruno Contrino
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/Doscheda
Branch: RELEASE_3_8
Last Commit: 61b8284
Last Changed Date: 2019-01-04 13:30:11 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Doscheda
Version: 1.4.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Doscheda_1.4.1.tar.gz && rm -rf Doscheda.buildbin-libdir && mkdir Doscheda.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Doscheda.buildbin-libdir Doscheda_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Doscheda_1.4.1.zip && rm Doscheda_1.4.1.tar.gz Doscheda_1.4.1.zip
StartedAt: 2019-04-12 20:32:02 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:33:21 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 78.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Doscheda_1.4.1.tar.gz && rm -rf Doscheda.buildbin-libdir && mkdir Doscheda.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Doscheda.buildbin-libdir Doscheda_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Doscheda_1.4.1.zip && rm Doscheda_1.4.1.tar.gz Doscheda_1.4.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2863k  100 2863k    0     0  38.7M      0 --:--:-- --:--:-- --:--:-- 41.1M

install for i386

* installing *source* package 'Doscheda' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for 'getInput' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getNorm' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getFinal' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getParameters' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getDatasets' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'boxplot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'corrPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'densityPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
Creating a new generic function for 'meanSdPlot' in package 'Doscheda'
** help
*** installing help indices
  converting help for package 'Doscheda'
    finding HTML links ... done
    ChemoProtSet-class                      html  
    boxplot-ChemoProtSet-method             html  
    corrPlot-methods                        html  
    densityPlot-methods                     html  
    doscheda                                html  
    doschedaApp                             html  
    doschedaData                            html  
    fitModel-methods                        html  
    getDatasets-methods                     html  
    getFinal-methods                        html  
    getInput-methods                        html  
    getNorm-methods                         html  
    getParameters-methods                   html  
    makeReport                              html  
    meanSdPlot-methods                      html  
    pcaPlot-methods                         html  
    plot.ChemoProtSet                       html  
    processedExample                        html  
    removePeptides-methods                  html  
    replicatePlot-methods                   html  
    runDoscheda                             html  
    runNormalisation-methods                html  
    setData-methods                         html  
    setParameters-methods                   html  
    volcanoPlot-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'Doscheda' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Doscheda' as Doscheda_1.4.1.zip
* DONE (Doscheda)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'Doscheda' successfully unpacked and MD5 sums checked
In R CMD INSTALL