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INSTALL report for CNVrd2 on tokay1

This page was generated on 2019-04-13 11:23:24 -0400 (Sat, 13 Apr 2019).

Package 296/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVrd2 1.20.0
Hoang Tan Nguyen
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/CNVrd2
Branch: RELEASE_3_8
Last Commit: f0332cc
Last Changed Date: 2018-10-30 11:41:52 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNVrd2
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CNVrd2_1.20.0.tar.gz && rm -rf CNVrd2.buildbin-libdir && mkdir CNVrd2.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVrd2.buildbin-libdir CNVrd2_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CNVrd2_1.20.0.zip && rm CNVrd2_1.20.0.tar.gz CNVrd2_1.20.0.zip
StartedAt: 2019-04-12 20:04:37 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:07:52 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 194.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CNVrd2_1.20.0.tar.gz && rm -rf CNVrd2.buildbin-libdir && mkdir CNVrd2.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVrd2.buildbin-libdir CNVrd2_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CNVrd2_1.20.0.zip && rm CNVrd2_1.20.0.tar.gz CNVrd2_1.20.0.zip
###
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100 2260k  100 2260k    0     0  25.6M      0 --:--:-- --:--:-- --:--:-- 26.9M

install for i386

* installing *source* package 'CNVrd2' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVrd2'
    finding HTML links ... done
    CNVrd2-class                            html  
    CNVrd2-package                          html  
    calculateLDSNPandCNV                    html  
    ccl3l1data                              html  
    clusteringCNVs-class                    html  
    countReadInWindow-methods               html  
    countReadInWindow                       html  
    emnormalCNV-methods                     html  
    emnormalCNV                             html  
    fcgr3bMXL                               html  
    groupBayesianCNVs                       html  
    groupCNVs-methods                       html  
    groupCNVs                               html  
    identifyPolymorphicRegion-methods       html  
    identifyPolymorphicRegion               html  
    numericOrNULL-class                     html  
    plotCNVrd2-methods                      html  
    plotCNVrd2                              html  
    plotPolymorphicRegion-methods           html  
    plotPolymorphicRegion                   html  
    searchGroupCNVs-methods                 html  
    searchGroupCNVs                         html  
    segmentSamples-methods                  html  
    segmentSamples                          html  
    segmentSamplesUsingPopInformation-methods
                                            html  
    segmentSamplesUsingPopInformation       html  
    vectorORfactor-class                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CNVrd2' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVrd2' as CNVrd2_1.20.0.zip
* DONE (CNVrd2)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'CNVrd2' successfully unpacked and MD5 sums checked
In R CMD INSTALL