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INSTALL report for CALIB on malbec1

This page was generated on 2019-04-16 11:48:19 -0400 (Tue, 16 Apr 2019).

Package 192/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CALIB 1.48.0
Hui Zhao
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/CALIB
Branch: RELEASE_3_8
Last Commit: 2ef1085
Last Changed Date: 2018-10-30 11:41:43 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: CALIB
Version: 1.48.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL CALIB
StartedAt: 2019-04-15 17:58:32 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 17:58:50 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 18.2 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL CALIB
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘CALIB’ ...
** libs
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c Design.cpp -o Design.o
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c Estimation.cpp -o Estimation.o
Estimation.cpp: In function ‘SEXPREC* estimation(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
  char *name[8] = {"MuS","Ka","P1","P2","SigmaA","SigmaM","SigmaS","SpotError"};
                                                                              ^
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c NormalizedData.cpp -o NormalizedData.o
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c ParameterofOneArray.cpp -o ParameterofOneArray.o
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c RawDataofOneArray.cpp -o RawDataofOneArray.o
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c SpikeofOneArray.cpp -o SpikeofOneArray.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o CALIB.so Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/CALIB/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CALIB)