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BUILD BIN report for bacon on merida1

This page was generated on 2019-04-16 11:59:24 -0400 (Tue, 16 Apr 2019).

Package 91/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bacon 1.10.1
Maarten van Iterson
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/bacon
Branch: RELEASE_3_8
Last Commit: f8f5cb0
Last Changed Date: 2019-01-04 13:19:23 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: bacon
Version: 1.10.1
Command: rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.10.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir
StartedAt: 2019-04-16 03:42:17 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 03:43:09 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 52.6 seconds
RetCode: 0
Status:  OK 
PackageFile: bacon_1.10.1.tgz
PackageFileSize: 2.37 MiB

Command output

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###
### Running command:
###
###   rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.10.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=bacon.buildbin-libdir bacon_1.10.1.tar.gz'
>>>>>>> 

* installing *source* package ‘bacon’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rinit.c -o Rinit.o
Rinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
  NULL
  ^˜˜˜
  {   }
/usr/local/clang4/bin/../lib/clang/4.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c bacon.c -o bacon.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bacon.so Rinit.o bacon.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/bacon.buildbin-libdir/bacon/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bacon)


>>>>>>> 
>>>>>>> FIXING LINKS FOR bacon.buildbin-libdir/bacon/libs//bacon.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"