Package: IntEREst

Version: 1.6.2

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings IntEREst_1.6.2.tar.gz

StartedAt: 2019-04-16 00:50:07 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 00:55:07 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 299.6 seconds

RetCode: 0

Status:  OK

CheckDir: IntEREst.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings IntEREst_1.6.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/IntEREst.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IntEREst/DESCRIPTION’ ... OK
* this is package ‘IntEREst’ version ‘1.6.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IntEREst’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
DEXSeqIntEREst 35.384  0.112  35.597
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL IntEREst
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘IntEREst’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IntEREst)

name	user	system	elapsed
DEXSeqIntEREst	35.384	0.112	35.597
addAnnotation	0.060	0.004	0.063
annotateU12	2.840	0.024	2.952
attributes	0.036	0.000	0.035
boxplot-method	0.064	0.000	0.064
buildSsTypePwms	0	0	0
counts-method	0.060	0.000	0.061
deseqInterest	2.428	0.000	2.429
exactTestInterest	0.108	0.000	0.106
getRepeatTable	0	0	0
glmInterest	0.168	0.000	0.169
interest	2.788	0.020	2.830
interest.sequential	1.688	0.004	1.695
interestResult	0.024	0.000	0.022
interestResultIntEx	0.208	0.000	0.210
intexIndex	0.008	0.000	0.009
lfc	0.2	0.0	0.2
mergeInterestResult	0.280	0.000	0.288
plot-method	0.336	0.004	0.340
psi	1.136	0.000	1.138
qlfInterest	0.220	0.012	0.235
readInterestResults	0.048	0.000	0.050
referencePrepare	0.960	0.000	0.958
subInterestResult	0.028	0.000	0.029
treatInterest	0.140	0.000	0.143
u12Boxplot	0.072	0.000	0.069
u12BoxplotNb	0.128	0.000	0.130
u12DensityPlot	0.464	0.012	0.479
u12Index	0.016	0.000	0.013
u12NbIndex	0.148	0.000	0.148
unionRefTr	0.036	0.000	0.034
updateRowDataCol	0.044	0.000	0.046