Back to Multiple platform build/check report for BioC 3.7 experimental data

CHECK report for topdownrdata on malbec2

This page was generated on 2018-10-16 14:19:48 -0400 (Tue, 16 Oct 2018).

Package 327/342HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
topdownrdata 1.2.0
Sebastian Gibb
Snapshot Date: 2018-10-16 07:35:22 -0400 (Tue, 16 Oct 2018)
URL: https://git.bioconductor.org/packages/topdownrdata
Branch: RELEASE_3_7
Last Commit: 8939b8e
Last Changed Date: 2018-04-30 10:31:34 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: topdownrdata
Version: 1.2.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:topdownrdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings topdownrdata_1.2.0.tar.gz
StartedAt: 2018-10-16 11:32:18 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 11:34:39 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 141.4 seconds
RetCode: 0
Status:  OK 
CheckDir: topdownrdata.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:topdownrdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings topdownrdata_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/topdownrdata.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘topdownrdata/DESCRIPTION’ ... OK
* this is package ‘topdownrdata’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_2.experiments.csv.gz

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘topdownrdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.8Mb
  sub-directories of 1Mb or more:
    extdata  101.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/topdownrdata.Rcheck/00check.log’
for details.



Installation output

topdownrdata.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL topdownrdata
###
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘topdownrdata’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (topdownrdata)

Tests output


Example timings

topdownrdata.Rcheck/topdownrdata-Ex.timings

nameusersystemelapsed
topDownDataPath0.0000.0000.001
topdownrdata-package3.2720.0643.534