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BUILD BIN report for maanova on merida2

This page was generated on 2018-10-17 08:46:43 -0400 (Wed, 17 Oct 2018).

Package 812/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maanova 1.50.0
Keith Sheppard
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/maanova
Branch: RELEASE_3_7
Last Commit: fbba6b7
Last Changed Date: 2018-04-30 10:35:02 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: maanova
Version: 1.50.0
Command: rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maanova_1.50.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maanova.buildbin-libdir
StartedAt: 2018-10-17 01:36:56 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 01:37:49 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 52.2 seconds
RetCode: 0
Status:  OK 
PackageFile: maanova_1.50.0.tgz
PackageFileSize: 1.224 MiB

Command output

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###
### Running command:
###
###   rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maanova_1.50.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maanova.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=maanova.buildbin-libdir maanova_1.50.0.tar.gz'
>>>>>>> 

* installing *source* package ‘maanova’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c makeratio.c -o makeratio.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c masvd.c -o masvd.o
masvd.c:114:2: warning: '/*' within block comment [-Wcomment]
        /* work on a copy of x */
        ^
masvd.c:154:1: warning: '/*' within block comment [-Wcomment]
/*#ifndef IEEE_754
^
masvd.c:161:5: warning: '/*' within block comment [-Wcomment]
    /* work on a copy of x */
    ^
masvd.c:165:2: warning: '/*' within block comment [-Wcomment]
        /* ask for optimal size of work array */
        ^
masvd.c:189:2: warning: '/*' within block comment [-Wcomment]
        /* ask for optimal size of work array */
        ^
5 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c shift.c -o shift.o
shift.c:48:17: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
      sad[i] += abs(x[j]-med);
                ^
shift.c:48:17: note: use function 'fabs' instead
      sad[i] += abs(x[j]-med);
                ^˜˜
                fabs
shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
  int i, j, k;
            ^
2 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c util.c -o util.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o maanova.so makeratio.o masvd.o shift.o util.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/maanova.buildbin-libdir/maanova/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maanova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR maanova.buildbin-libdir/maanova/libs//maanova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"