Back to Multiple platform build/check report for BioC 3.7
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for fabia on merida2

This page was generated on 2018-10-17 08:48:41 -0400 (Wed, 17 Oct 2018).

Package 474/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fabia 2.26.0
Sepp Hochreiter
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/fabia
Branch: RELEASE_3_7
Last Commit: 05a3bfe
Last Changed Date: 2018-04-30 10:35:14 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: fabia
Version: 2.26.0
Command: rm -rf fabia.buildbin-libdir && mkdir fabia.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fabia_2.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R fabia.buildbin-libdir
StartedAt: 2018-10-17 01:18:18 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 01:19:12 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 54.4 seconds
RetCode: 0
Status:  OK 
PackageFile: fabia_2.26.0.tgz
PackageFileSize: 1.053 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf fabia.buildbin-libdir && mkdir fabia.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fabia_2.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R fabia.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fabia.buildbin-libdir fabia_2.26.0.tar.gz'
>>>>>>> 

* installing *source* package ‘fabia’ ...
checking for gcc... clang
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
checking how to run the C preprocessor... clang -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -fPIC  -Wall -g -O2  -c fabiac.c -o fabiac.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/fabia.buildbin-libdir/fabia/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (fabia)


>>>>>>> 
>>>>>>> FIXING LINKS FOR fabia.buildbin-libdir/fabia/libs//fabia.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "fabia.buildbin-libdir/fabia/libs//fabia.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "fabia.buildbin-libdir/fabia/libs//fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "fabia.buildbin-libdir/fabia/libs//fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "fabia.buildbin-libdir/fabia/libs//fabia.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "fabia.buildbin-libdir/fabia/libs//fabia.so"