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BUILD report for cosmiq on merida2

This page was generated on 2018-10-17 08:53:03 -0400 (Wed, 17 Oct 2018).

Package 312/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cosmiq 1.14.0
David Fischer , Christian Panse
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/cosmiq
Branch: RELEASE_3_7
Last Commit: 881f21c
Last Changed Date: 2018-04-30 10:35:33 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: cosmiq
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cosmiq
StartedAt: 2018-10-16 17:29:18 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 17:33:06 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 227.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cosmiq
###
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* checking for file ‘cosmiq/DESCRIPTION’ ... OK
* preparing ‘cosmiq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Rcpp
Create profile matrix with method 'bin' and step 1 ... OK
Combining spectra ...
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting mz peaks on master spectrum ...
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Creating EIC matrix ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting chromatographic peaks from EIC matrix ...
Detecting mz peaks on master spectrum ...
1 of  8 Peaknum =  4
Detecting mz peaks on master spectrum ...
2 of  8 Peaknum =  7
Detecting mz peaks on master spectrum ...
3 of  8 Peaknum =  8
Detecting mz peaks on master spectrum ...
4 of  8 Peaknum =  11
Detecting mz peaks on master spectrum ...
5 of  8 Peaknum =  15
Detecting mz peaks on master spectrum ...
6 of  8 Peaknum =  17
Detecting mz peaks on master spectrum ...
7 of  8 Peaknum =  21
Detecting mz peaks on master spectrum ...
8 of  8 Peaknum =  26
Quantifying mz/RT features ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
Combining spectra ...
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting mz peaks on master spectrum ...
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Creating EIC matrix ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting chromatographic peaks from EIC matrix ...
Detecting mz peaks on master spectrum ...
1 of  8 Peaknum =  4
Detecting mz peaks on master spectrum ...
2 of  8 Peaknum =  7
Detecting mz peaks on master spectrum ...
3 of  8 Peaknum =  8
Detecting mz peaks on master spectrum ...
4 of  8 Peaknum =  11
Detecting mz peaks on master spectrum ...
5 of  8 Peaknum =  15
Detecting mz peaks on master spectrum ...
6 of  8 Peaknum =  17
Detecting mz peaks on master spectrum ...
7 of  8 Peaknum =  21
Detecting mz peaks on master spectrum ...
8 of  8 Peaknum =  26
Quantifying mz/RT features ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'poster.tex' failed.
LaTeX errors:
! Dimension too large.
\balance@columns ...o\z@ \@tempdima \ht \mult@box 
                                                  \advance \@tempdima \dp \m...
l.296 \end{multicols}
                     
! Dimension too large.
\balance@columns ...o\z@ \@tempdima \ht \mult@box 
                                                  \advance \@tempdima \dp \m...
l.395 \end{multicols}
                     
! Dimension too large.
\iterate ...tbox 
}\fi \ifdim \ht \mult@grightbox 
                                                  >\dimen@ \too@badtrue \ifn...
l.395 \end{multicols}
! Dimension too large.
\iterate ...tbox 
}\fi \ifdim \ht \mult@grightbox 
                                                  >\dimen@ \too@badtrue \ifn...
l.395 \end{multicols}
! Dimension too large.
\iterate ...tbox 
}\fi \ifdim \ht \mult@grightbox 
                                                  >\dimen@ \too@badtrue \ifn...
l.395 \end{multicols}
! Dimensi
Calls: <Anonymous> -> texi2pdf -> texi2dvi
Execution halted