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INSTALL report for affycoretools on tokay2

This page was generated on 2018-10-17 08:32:38 -0400 (Wed, 17 Oct 2018).

Package 21/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affycoretools 1.52.2
James W. MacDonald
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/affycoretools
Branch: RELEASE_3_7
Last Commit: 2f98c74
Last Changed Date: 2018-07-26 13:24:41 -0400 (Thu, 26 Jul 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: affycoretools
Version: 1.52.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/affycoretools_1.52.2.tar.gz && rm -rf affycoretools.buildbin-libdir && mkdir affycoretools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycoretools.buildbin-libdir affycoretools_1.52.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL affycoretools_1.52.2.zip && rm affycoretools_1.52.2.tar.gz affycoretools_1.52.2.zip
StartedAt: 2018-10-16 20:36:26 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:37:51 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 84.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/affycoretools_1.52.2.tar.gz && rm -rf affycoretools.buildbin-libdir && mkdir affycoretools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycoretools.buildbin-libdir affycoretools_1.52.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL affycoretools_1.52.2.zip && rm affycoretools_1.52.2.tar.gz affycoretools_1.52.2.zip
###
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100 6443k  100 6443k    0     0  45.0M      0 --:--:-- --:--:-- --:--:-- 47.6M

install for i386

* installing *source* package 'affycoretools' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'affycoretools'
    finding HTML links ... done
    affycoretools-defunct                   html  
    affycoretools                           html  
    affystart                               html  
    annotateEset                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmeIfIB/R.INSTALL20e46c105ecf/affycoretools/man/annotateEset.Rd:47: file link 'columns' in package 'AnnotationDbi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmeIfIB/R.INSTALL20e46c105ecf/affycoretools/man/annotateEset.Rd:50: file link 'mapIds' in package 'AnnotationDbi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmeIfIB/R.INSTALL20e46c105ecf/affycoretools/man/annotateEset.Rd:55: file link 'rma' in package 'oligo' does not exist and so has been treated as a topic
    dataAndHeatmapPage                      html  
    entrezLinks                             html  
    fixHeaderAndGo                          html  
    geneSetPage                             html  
    finding level-2 HTML links ... done

    getCols                                 html  
    getMainProbes                           html  
    gsHeatmap                               html  
    intNames                                html  
    make.cl                                 html  
    makeGoGeneTable                         html  
    makeGoTable                             html  
    makeHmap                                html  
    makeImages                              html  
    makeIndices                             html  
    makeVenn                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmeIfIB/R.INSTALL20e46c105ecf/affycoretools/man/makeVenn.Rd:72: file link 'glmQLFit' in package 'edgeR' does not exist and so has been treated as a topic
    maplot                                  html  
    mirna2mrna                              html  
    outputRomer                             html  
    pca.legend                              html  
    plotDeg                                 html  
    plotPCA                                 html  
    runRomer                                html  
    tableFilt                               html  
    venn4Way                                html  
    vennCounts2                             html  
    vennInLine                              html  
    vennPage                                html  
    vennSelect2                             html  
    writeFit                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmeIfIB/R.INSTALL20e46c105ecf/affycoretools/man/writeFit.Rd:35: file link 'write.fit' in package 'limma' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'affycoretools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affycoretools' as affycoretools_1.52.2.zip
* DONE (affycoretools)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'affycoretools' successfully unpacked and MD5 sums checked
In R CMD INSTALL