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CHECK report for JASPAR2018 on malbec2

This page was generated on 2018-02-21 07:13:21 -0500 (Wed, 21 Feb 2018).

Package 738/1502HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
JASPAR2018 1.1.0
Ge Tan
Snapshot Date: 2018-02-20 17:01:59 -0500 (Tue, 20 Feb 2018)
URL: https://git.bioconductor.org/packages/JASPAR2018
Branch: master
Last Commit: cf8598d
Last Changed Date: 2017-10-30 12:54:33 -0500 (Mon, 30 Oct 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]YES, package does not exist in internal repository.
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK YES, package does not exist in internal repository.
merida2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK YES, package does not exist in internal repository.

Summary

Package: JASPAR2018
Version: 1.1.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --no-vignettes --timings JASPAR2018_1.1.0.tar.gz
StartedAt: 2018-02-21 00:30:39 -0500 (Wed, 21 Feb 2018)
EndedAt: 2018-02-21 00:31:05 -0500 (Wed, 21 Feb 2018)
EllapsedTime: 26.1 seconds
RetCode: 0
Status:  OK 
CheckDir: JASPAR2018.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --no-vignettes --timings JASPAR2018_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/JASPAR2018.Rcheck’
* using R Under development (unstable) (2018-01-28 r74177)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘JASPAR2018/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘JASPAR2018’ version ‘1.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘JASPAR2018’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 30.7Mb
  sub-directories of 1Mb or more:
    extdata  30.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
JASPAR2018-class 11.396  0.316  11.834
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.7-bioc/meat/JASPAR2018.Rcheck/00check.log’
for details.



Installation output

JASPAR2018.Rcheck/00install.out

* installing *source* package ‘JASPAR2018’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (JASPAR2018)

Tests output


Example timings

JASPAR2018.Rcheck/JASPAR2018-Ex.timings

nameusersystemelapsed
JASPAR2018-class11.396 0.31611.834
JASPAR2018-package000