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BUILD BIN report for HilbertVis on merida2

This page was generated on 2018-10-17 08:47:58 -0400 (Wed, 17 Oct 2018).

Package 687/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertVis 1.38.0
Simon Anders
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/HilbertVis
Branch: RELEASE_3_7
Last Commit: 7f8c498
Last Changed Date: 2018-04-30 10:35:10 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: HilbertVis
Version: 1.38.0
Command: rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HilbertVis.buildbin-libdir
StartedAt: 2018-10-17 01:29:43 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 01:30:38 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 54.9 seconds
RetCode: 0
Status:  OK 
PackageFile: HilbertVis_1.38.0.tgz
PackageFileSize: 925.2 KiB

Command output

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### Running command:
###
###   rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HilbertVis.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HilbertVis.buildbin-libdir HilbertVis_1.38.0.tar.gz'
>>>>>>> 

* installing *source* package ‘HilbertVis’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c hilbert.c -o hilbert.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c make_wiggle_vector.c -o make_wiggle_vector.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c shrink_vector.c -o shrink_vector.o
shrink_vector.c:76:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^
shrink_vector.c:76:20: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^˜˜
                   fabs
shrink_vector.c:76:49: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^
shrink_vector.c:76:49: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^˜˜
                                                fabs
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/HilbertVis.buildbin-libdir/HilbertVis/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertVis)


>>>>>>> 
>>>>>>> FIXING LINKS FOR HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"