Back to Multiple platform build/check report for BioC 3.7
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

CHECK report for HilbertCurve on merida2

This page was generated on 2018-10-17 08:55:08 -0400 (Wed, 17 Oct 2018).

Package 686/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.10.1
Zuguang Gu
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/HilbertCurve
Branch: RELEASE_3_7
Last Commit: 624c7ef
Last Changed Date: 2018-06-19 10:06:49 -0400 (Tue, 19 Jun 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: HilbertCurve
Version: 1.10.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.10.1.tar.gz
StartedAt: 2018-10-16 21:58:59 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 22:01:27 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 147.8 seconds
RetCode: 0
Status:  OK 
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.10.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.10.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        17.360  0.648  18.188
hc_layer-GenomicHilbertCurve-method 10.352  0.176  10.576
GenomicHilbertCurve                  9.304  0.111  10.042
hc_png-HilbertCurve-method           5.772  0.217   6.028
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  3.312   0.227   3.515 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class0.0020.0000.002
GenomicHilbertCurve 9.304 0.11110.042
HilbertCurve-class0.0010.0010.002
HilbertCurve1.0420.0151.070
default_overlay0.0010.0000.001
hc_centered_text-HilbertCurve-method0.1380.0010.139
hc_layer-GenomicHilbertCurve-method10.352 0.17610.576
hc_layer-HilbertCurve-method17.360 0.64818.188
hc_layer-dispatch0.0010.0000.001
hc_level-HilbertCurve-method0.0350.0020.039
hc_map-GenomicHilbertCurve-method2.6500.0192.697
hc_normal_points-HilbertCurve-method0.0010.0000.001
hc_offset-HilbertCurve-method0.0260.0010.029
hc_png-HilbertCurve-method5.7720.2176.028
hc_points-GenomicHilbertCurve-method0.3390.0020.345
hc_points-HilbertCurve-method0.5640.0120.579
hc_points-dispatch0.0020.0010.002
hc_polygon-GenomicHilbertCurve-method0.4330.0040.440
hc_polygon-HilbertCurve-method0.0510.0010.053
hc_polygon-dispatch0.0010.0000.001
hc_rect-GenomicHilbertCurve-method0.2480.0010.251
hc_rect-HilbertCurve-method0.0390.0010.040
hc_rect-dispatch0.0010.0010.001
hc_segmented_points-HilbertCurve-method0.0010.0000.001
hc_segments-GenomicHilbertCurve-method0.5740.0020.580
hc_segments-HilbertCurve-method0.0650.0010.065
hc_segments-dispatch0.0010.0000.001
hc_text-GenomicHilbertCurve-method0.1110.0020.112
hc_text-HilbertCurve-method0.0950.0010.099
hc_text-dispatch0.0010.0000.002
show-HilbertCurve-method0.0110.0010.011
unzoom-HilbertCurve-method0.0210.0000.021
zoom-HilbertCurve-method0.0080.0010.008