Back to Multiple platform build/check report for BioC 3.7
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for DEGseq on merida2

This page was generated on 2018-10-17 08:48:23 -0400 (Wed, 17 Oct 2018).

Package 364/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEGseq 1.34.1
Likun Wang
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/DEGseq
Branch: RELEASE_3_7
Last Commit: 90cd7a6
Last Changed Date: 2018-08-04 11:31:12 -0400 (Sat, 04 Aug 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: DEGseq
Version: 1.34.1
Command: rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DEGseq_1.34.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DEGseq.buildbin-libdir
StartedAt: 2018-10-17 01:12:07 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 01:13:13 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 66.1 seconds
RetCode: 0
Status:  OK 
PackageFile: DEGseq_1.34.1.tgz
PackageFileSize: 2.15 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DEGseq_1.34.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DEGseq.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DEGseq.buildbin-libdir DEGseq_1.34.1.tar.gz'
>>>>>>> 

* installing *source* package ‘DEGseq’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c getGeneExp.cpp -o getGeneExp.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DEGseq.so getGeneExp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/DEGseq.buildbin-libdir/DEGseq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DEGseq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DEGseq.buildbin-libdir/DEGseq/libs//DEGseq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "DEGseq.buildbin-libdir/DEGseq/libs//DEGseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "DEGseq.buildbin-libdir/DEGseq/libs//DEGseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "DEGseq.buildbin-libdir/DEGseq/libs//DEGseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "DEGseq.buildbin-libdir/DEGseq/libs//DEGseq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "DEGseq.buildbin-libdir/DEGseq/libs//DEGseq.so"