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INSTALL report for Clonality on tokay2

This page was generated on 2018-10-17 08:35:06 -0400 (Wed, 17 Oct 2018).

Package 256/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Clonality 1.28.0
Irina Ostrovnaya
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/Clonality
Branch: RELEASE_3_7
Last Commit: e73149d
Last Changed Date: 2018-04-30 10:35:15 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Clonality
Version: 1.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Clonality_1.28.0.tar.gz && rm -rf Clonality.buildbin-libdir && mkdir Clonality.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Clonality.buildbin-libdir Clonality_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Clonality_1.28.0.zip && rm Clonality_1.28.0.tar.gz Clonality_1.28.0.zip
StartedAt: 2018-10-16 18:46:38 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:47:18 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 40.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Clonality_1.28.0.tar.gz && rm -rf Clonality.buildbin-libdir && mkdir Clonality.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Clonality.buildbin-libdir Clonality_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Clonality_1.28.0.zip && rm Clonality_1.28.0.tar.gz Clonality_1.28.0.zip
###
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install for i386

* installing *source* package 'Clonality' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Clonality'
    finding HTML links ... done
    Clonality-internal                      html  
    Clonality-package                       html  
    ECMtesting                              html  
    LOHclonality                            html  
    LRtesting3or4tumors                     html  
    SNVtest                                 html  
    ave.adj.probes                          html  
    chromosomePlots                         html  
    clonality.analysis                      html  
    genomewidePlots                         html  
    grid.lik                                html  
    histogramPlot                           html  
    lcis                                    html  
    model.lik                               html  
    mutation.proba                          html  
    mutation.rem                            html  
    print.mutation.proba                    html  
    print.mutation.rem                      html  
    splitChromosomes                        html  
    xidens                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'Clonality' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Clonality' as Clonality_1.28.0.zip
* DONE (Clonality)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'Clonality' successfully unpacked and MD5 sums checked
In R CMD INSTALL