Back to Multiple platform build/check report for BioC 3.7
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for BPRMeth on merida2

This page was generated on 2018-10-17 08:57:27 -0400 (Wed, 17 Oct 2018).

Package 161/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BPRMeth 1.6.0
Chantriolnt-Andreas Kapourani
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/BPRMeth
Branch: RELEASE_3_7
Last Commit: accfdf1
Last Changed Date: 2018-04-30 10:35:44 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BPRMeth
Version: 1.6.0
Command: rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BPRMeth_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BPRMeth.buildbin-libdir
StartedAt: 2018-10-17 01:00:40 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 01:01:33 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 53.7 seconds
RetCode: 0
Status:  OK 
PackageFile: BPRMeth_1.6.0.tgz
PackageFileSize: 3.757 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BPRMeth_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BPRMeth.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BPRMeth.buildbin-libdir BPRMeth_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BPRMeth’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2 -c model_likelihood.cpp -o model_likelihood.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BPRMeth.so RcppExports.o model_likelihood.o -fopenmp -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/BPRMeth.buildbin-libdir/BPRMeth/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BPRMeth)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "BPRMeth.buildbin-libdir/BPRMeth/libs//BPRMeth.so"