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INSTALL report for zinbwave on tokay2

This page was generated on 2018-10-17 08:44:06 -0400 (Wed, 17 Oct 2018).

Package 1560/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zinbwave 1.2.0
Davide Risso
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/zinbwave
Branch: RELEASE_3_7
Last Commit: 6fe1e59
Last Changed Date: 2018-04-30 10:35:47 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: zinbwave
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/zinbwave_1.2.0.tar.gz && rm -rf zinbwave.buildbin-libdir && mkdir zinbwave.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zinbwave.buildbin-libdir zinbwave_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL zinbwave_1.2.0.zip && rm zinbwave_1.2.0.tar.gz zinbwave_1.2.0.zip
StartedAt: 2018-10-16 19:37:53 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:40:00 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 127.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/zinbwave_1.2.0.tar.gz && rm -rf zinbwave.buildbin-libdir && mkdir zinbwave.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zinbwave.buildbin-libdir zinbwave_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL zinbwave_1.2.0.zip && rm zinbwave_1.2.0.tar.gz zinbwave_1.2.0.zip
###
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install for i386

* installing *source* package 'zinbwave' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'zinbwave'
    finding HTML links ... done
    ZinbModel-class                         html  
    computeDevianceResiduals                html  
    computeObservationalWeights             html  
    getAlpha_mu                             html  
    getAlpha_pi                             html  
    getBeta_mu                              html  
    getBeta_pi                              html  
    getEpsilon_W                            html  
    getEpsilon_alpha                        html  
    getEpsilon_beta_mu                      html  
    getEpsilon_beta_pi                      html  
    getEpsilon_gamma_mu                     html  
    getEpsilon_gamma_pi                     html  
    getEpsilon_zeta                         html  
    getGamma_mu                             html  
    getGamma_pi                             html  
    getLogMu                                html  
    getLogitPi                              html  
    getMu                                   html  
    getPhi                                  html  
    getPi                                   html  
    getTheta                                html  
    getV_mu                                 html  
    getV_pi                                 html  
    getW                                    html  
    getX_mu                                 html  
    getX_pi                                 html  
    getZeta                                 html  
    glmWeightedF                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/glmWeightedF.Rd:35: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/glmWeightedF.Rd:52: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
    imputeZeros                             html  
    independentFiltering                    html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/independentFiltering.Rd:19: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
    loglik                                  html  
    nFactors                                html  
    nFeatures                               html  
    nParams                                 html  
    nSamples                                html  
    orthogonalizeTraceNorm                  html  
    penalty                                 html  
    pvalueAdjustment                        html  
    solveRidgeRegression                    html  
    toydata                                 html  
    zinb.loglik                             html  
    zinb.loglik.dispersion                  html  
    zinb.loglik.dispersion.gradient         html  
    zinb.loglik.matrix                      html  
    zinb.loglik.regression                  html  
    zinb.loglik.regression.gradient         html  
    zinb.regression.parseModel              html  
    zinbAIC                                 html  
    zinbBIC                                 html  
    zinbFit                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbFit.Rd:56: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbFit.Rd:81: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    zinbInitialize                          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbInitialize.Rd:19: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    zinbModel                               html  
    zinbOptimize                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbOptimize.Rd:28: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    zinbOptimizeDispersion                  html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbOptimizeDispersion.Rd:27: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    zinbSim                                 html  
    zinbwave                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbwave.Rd:58: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbwave.Rd:98: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'zinbwave' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zinbwave' as zinbwave_1.2.0.zip
* DONE (zinbwave)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'zinbwave' successfully unpacked and MD5 sums checked
In R CMD INSTALL