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BUILD BIN report for vsn on tokay2

This page was generated on 2018-10-17 08:31:50 -0400 (Wed, 17 Oct 2018).

Package 1539/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
vsn 3.48.1
Wolfgang Huber
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/vsn
Branch: RELEASE_3_7
Last Commit: d57f641
Last Changed Date: 2018-05-23 09:16:51 -0400 (Wed, 23 May 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: vsn
Version: 3.48.1
Command: rm -rf vsn.buildbin-libdir && mkdir vsn.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=vsn.buildbin-libdir vsn_3.48.1.tar.gz
StartedAt: 2018-10-17 07:06:40 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 07:07:00 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 19.3 seconds
RetCode: 0
Status:  OK  
PackageFile: vsn_3.48.1.zip
PackageFileSize: 1.515 MiB

Command output

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### Running command:
###
###   rm -rf vsn.buildbin-libdir && mkdir vsn.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=vsn.buildbin-libdir vsn_3.48.1.tar.gz
###
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install for i386

* installing *source* package 'vsn' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c vsn.c -o vsn.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c vsn2.c -o vsn2.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o vsn.dll tmp.def init.o vsn.o vsn2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/vsn.buildbin-libdir/vsn/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'vsn'
    finding HTML links ... done
    class.vsn                               html  
    class.vsnInput                          html  
    justvsn                                 html  
    kidney                                  html  
    lymphoma                                html  
    meanSdPlot                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqsaYnd/R.INSTALLccc5d4a1220/vsn/man/meanSdPlot.Rd:43: file link 'stat_binhex' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqsaYnd/R.INSTALLccc5d4a1220/vsn/man/meanSdPlot.Rd:44: file link 'stat_binhex' in package 'ggplot2' does not exist and so has been treated as a topic
    normalize.AffyBatch.vsn                 html  
    sagmbSimulateData                       html  
    scalingFactorTransformation             html  
    vsn-package                             html  
    vsn2                                    html  
    vsn2trsf                                html  
    vsnLikelihood                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'vsn' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c vsn.c -o vsn.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c vsn2.c -o vsn2.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o vsn.dll tmp.def init.o vsn.o vsn2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/vsn.buildbin-libdir/vsn/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'vsn' as vsn_3.48.1.zip
* DONE (vsn)
In R CMD INSTALL
In R CMD INSTALL