Juan R Gonzalez
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/tweeDEseq |
| Branch: RELEASE_3_7 |
| Last Commit: 8e4c982 |
| Last Changed Date: 2018-04-30 10:35:22 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:35:53 -0400 (Wed, 17 Oct 2018).
| Package 1518/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| tweeDEseq 1.26.0 Juan R Gonzalez
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: tweeDEseq |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/tweeDEseq_1.26.0.tar.gz && rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tweeDEseq.buildbin-libdir tweeDEseq_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL tweeDEseq_1.26.0.zip && rm tweeDEseq_1.26.0.tar.gz tweeDEseq_1.26.0.zip |
| StartedAt: 2018-10-16 19:07:33 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:08:13 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 39.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/tweeDEseq_1.26.0.tar.gz && rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tweeDEseq.buildbin-libdir tweeDEseq_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL tweeDEseq_1.26.0.zip && rm tweeDEseq_1.26.0.tar.gz tweeDEseq_1.26.0.zip
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install for i386
* installing *source* package 'tweeDEseq' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c cov_wt_C.c -o cov_wt_C.o
cov_wt_C.c: In function 'cov_wt_C':
cov_wt_C.c:79:14: warning: 'wvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(aux), free(wvar), free(y);
^
cov_wt_C.c: In function 'momentEstimates_wt_C':
cov_wt_C.c:154:12: warning: 'moments' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(y), free(moments), free(aux);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init_tweeDEseq.c -o init_tweeDEseq.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c loglikGlm.c -o loglikGlm.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c logprobs.c -o logprobs.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c permtest.c -o permtest.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c probs.c -o probs.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c zhu2.c -o zhu2.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c zhu3.c -o zhu3.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o tweeDEseq.dll tmp.def cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'tweeDEseq'
finding HTML links ... done
compareCountDistributions html
distPoissonTweedie html
filterCounts html
glmPT html
gofTest html
mlePoissonTweedie html
normalizeCounts html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEhxsYu/R.INSTALL157c18918c5/tweeDEseq/man/normalizeCounts.Rd:64: file link 'edgeR' in package 'edgeR' does not exist and so has been treated as a topic
print.mlePT html
qqchisq html
finding level-2 HTML links ... done
seizure html
testShapePT html
tweeDE html
tweeDEseq-internal html
tweeDExact html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'tweeDEseq' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c cov_wt_C.c -o cov_wt_C.o
cov_wt_C.c: In function 'cov_wt_C':
cov_wt_C.c:79:14: warning: 'wvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(aux), free(wvar), free(y);
^
cov_wt_C.c: In function 'momentEstimates_wt_C':
cov_wt_C.c:154:12: warning: 'moments' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(y), free(moments), free(aux);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init_tweeDEseq.c -o init_tweeDEseq.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c loglikGlm.c -o loglikGlm.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c logprobs.c -o logprobs.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c permtest.c -o permtest.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c probs.c -o probs.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c zhu2.c -o zhu2.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c zhu3.c -o zhu3.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o tweeDEseq.dll tmp.def cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tweeDEseq' as tweeDEseq_1.26.0.zip
* DONE (tweeDEseq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'tweeDEseq' successfully unpacked and MD5 sums checked
In R CMD INSTALL