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INSTALL report for trigger on tokay2

This page was generated on 2018-10-17 08:35:55 -0400 (Wed, 17 Oct 2018).

Package 1506/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trigger 1.26.0
John D. Storey
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/trigger
Branch: RELEASE_3_7
Last Commit: a325efb
Last Changed Date: 2018-04-30 10:35:22 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: trigger
Version: 1.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/trigger_1.26.0.tar.gz && rm -rf trigger.buildbin-libdir && mkdir trigger.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trigger.buildbin-libdir trigger_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL trigger_1.26.0.zip && rm trigger_1.26.0.tar.gz trigger_1.26.0.zip
StartedAt: 2018-10-16 19:13:32 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:14:28 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 56.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/trigger_1.26.0.tar.gz && rm -rf trigger.buildbin-libdir && mkdir trigger.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trigger.buildbin-libdir trigger_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL trigger_1.26.0.zip && rm trigger_1.26.0.tar.gz trigger_1.26.0.zip
###
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100 1516k  100 1516k    0     0  19.4M      0 --:--:-- --:--:-- --:--:-- 21.4M

install for i386

* installing *source* package 'trigger' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c trigger.c -o trigger.o
trigger.c: In function 'mergeorder':
trigger.c:25:20: warning: variable 'n3' set but not used [-Wunused-but-set-variable]
 int i1,i2,i3,n1,n2,n3;
                    ^
trigger.c: In function 'sec_link_stat':
trigger.c:81:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'sec_link_stat_x':
trigger.c:153:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat':
trigger.c:233:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'condi_indep_stat_x':
trigger.c:310:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat_rx':
trigger.c:393:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o trigger.dll tmp.def trigger.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/trigger.buildbin-libdir/trigger/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'trigger'
    finding HTML links ... done
    plot                                    html  
    trigger-build                           html  
    trigger-class                           html  
    trigger-eigenR2                         html  
    trigger-export2cross                    html  
    trigger-link                            html  
    trigger-loclink                         html  
    trigger-mlink                           html  
    trigger-net                             html  
    trigger-netPlot2ps                      html  
    trigger-trait                           html  
    yeast                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'trigger' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c trigger.c -o trigger.o
trigger.c: In function 'mergeorder':
trigger.c:25:20: warning: variable 'n3' set but not used [-Wunused-but-set-variable]
 int i1,i2,i3,n1,n2,n3;
                    ^
trigger.c: In function 'sec_link_stat':
trigger.c:81:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'sec_link_stat_x':
trigger.c:153:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat':
trigger.c:233:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'condi_indep_stat_x':
trigger.c:310:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat_rx':
trigger.c:393:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o trigger.dll tmp.def trigger.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/trigger.buildbin-libdir/trigger/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trigger' as trigger_1.26.0.zip
* DONE (trigger)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'trigger' successfully unpacked and MD5 sums checked
In R CMD INSTALL