Sebastian Gibb
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/topdownr |
| Branch: RELEASE_3_7 |
| Last Commit: 8c9dfe3 |
| Last Changed Date: 2018-04-30 10:35:48 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:44:49 -0400 (Wed, 17 Oct 2018).
| Package 1492/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| topdownr 1.2.0 Sebastian Gibb
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: topdownr |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/topdownr_1.2.0.tar.gz && rm -rf topdownr.buildbin-libdir && mkdir topdownr.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=topdownr.buildbin-libdir topdownr_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL topdownr_1.2.0.zip && rm topdownr_1.2.0.tar.gz topdownr_1.2.0.zip |
| StartedAt: 2018-10-16 19:50:30 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:51:18 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 48.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/topdownr_1.2.0.tar.gz && rm -rf topdownr.buildbin-libdir && mkdir topdownr.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=topdownr.buildbin-libdir topdownr_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL topdownr_1.2.0.zip && rm topdownr_1.2.0.tar.gz topdownr_1.2.0.zip
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install for i386
* installing *source* package 'topdownr' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'topdownr'
finding HTML links ... done
AbstractTopDownSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/AbstractTopDownSet-class.Rd:228: file link 'XStringViews' in package 'Biostrings' does not exist and so has been treated as a topic
FragmentViews-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/FragmentViews-class.Rd:75: file link 'AAString' in package 'Biostrings' does not exist and so has been treated as a topic
NCBSet-class html
TopDownSet-class html
default-functions html
readTopDownFiles html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/readTopDownFiles.Rd:27: file link 'calculateFragments' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/readTopDownFiles.Rd:48: file link 'calculateFragments' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/readTopDownFiles.Rd:49: file link 'defaultNeutralLoss' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/readTopDownFiles.Rd:108: file link 'calculateFragments' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/readTopDownFiles.Rd:134: file link 'calculateFragments' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmps3hDLj/R.INSTALLa0858fd578b/topdownr/man/readTopDownFiles.Rd:135: file link 'defaultNeutralLoss' in package 'MSnbase' does not exist and so has been treated as a topic
tds html
topdownr-package html
windows-specific-functions html
writeMethodXmls html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'topdownr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'topdownr' as topdownr_1.2.0.zip
* DONE (topdownr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'topdownr' successfully unpacked and MD5 sums checked
In R CMD INSTALL