Back to Multiple platform build/check report for BioC 3.7
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

INSTALL report for tilingArray on tokay2

This page was generated on 2018-10-17 08:32:23 -0400 (Wed, 17 Oct 2018).

Package 1481/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tilingArray 1.58.0
Zhenyu Xu
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/tilingArray
Branch: RELEASE_3_7
Last Commit: f292935
Last Changed Date: 2018-04-30 10:35:01 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: tilingArray
Version: 1.58.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/tilingArray_1.58.0.tar.gz && rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tilingArray.buildbin-libdir tilingArray_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL tilingArray_1.58.0.zip && rm tilingArray_1.58.0.tar.gz tilingArray_1.58.0.zip
StartedAt: 2018-10-16 19:32:41 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:33:42 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 60.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/tilingArray_1.58.0.tar.gz && rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tilingArray.buildbin-libdir tilingArray_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL tilingArray_1.58.0.zip && rm tilingArray_1.58.0.tar.gz tilingArray_1.58.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1161k  100 1161k    0     0  16.1M      0 --:--:-- --:--:-- --:--:-- 18.0M

install for i386

* installing *source* package 'tilingArray' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c findsegments.c -o findsegments.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c sampleStep.c -o sampleStep.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/tilingArray.buildbin-libdir/tilingArray/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'tilingArray'
    finding HTML links ... done
    PMindex                                 html  
    breakpointsPretend                      html  
    class-segmentation                      html  
    comparisonPlot                          html  
    costMatrix                              html  
    findsegments                            html  
    gffSub                                  html  
    normalizeByReference                    html  
    otherStrand                             html  
    plotAlongChrom                          html  
    plotAlongChromLegend                    html  
    plotFeatures                            html  
    plotSegmentationDots                    html  
    plotSegmentationHeatmap                 html  
    plotpenLL                               html  
    posMin                                  html  
    qcPlots                                 html  
    readCel2eSet                            html  
    sampleStep                              html  
    segChrom                                html  
    segment                                 html  
    segnf                                   html  
    tilingArray-package                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'tilingArray' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c findsegments.c -o findsegments.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c sampleStep.c -o sampleStep.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/tilingArray.buildbin-libdir/tilingArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tilingArray' as tilingArray_1.58.0.zip
* DONE (tilingArray)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'tilingArray' successfully unpacked and MD5 sums checked
In R CMD INSTALL