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INSTALL report for synapter on tokay2

This page was generated on 2018-10-17 08:36:23 -0400 (Wed, 17 Oct 2018).

Package 1459/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
synapter 2.4.1
Laurent Gatto
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/synapter
Branch: RELEASE_3_7
Last Commit: 3911092
Last Changed Date: 2018-05-23 09:18:48 -0400 (Wed, 23 May 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: synapter
Version: 2.4.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/synapter_2.4.1.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.4.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL synapter_2.4.1.zip && rm synapter_2.4.1.tar.gz synapter_2.4.1.zip
StartedAt: 2018-10-16 19:53:20 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:54:20 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 59.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/synapter_2.4.1.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.4.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL synapter_2.4.1.zip && rm synapter_2.4.1.tar.gz synapter_2.4.1.zip
###
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100 5802k  100 5802k    0     0  47.8M      0 --:--:-- --:--:-- --:--:-- 51.0M

install for i386

* installing *source* package 'synapter' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'synapter'
    finding HTML links ... done
    MasterFdrResults-class                  html  
    MasterPeptides-class                    html  
    Synapter                                html  
    finding level-2 HTML links ... done

    createUniquePeptideDbRds                html  
    defunct                                 html  
    estimateMasterFdr                       html  
    inspectPeptideScores                    html  
    makeMaster                              html  
    plotCrossMatching                       html  
    requantify                              html  
    rescaleForTop3                          html  
    synapter-package                        html  
    synapterGuide                           html  
    synapterPlgsAgreement                   html  
    synapterTinyData                        html  
    synergise                               html  
    synergise2                              html  
** building package indices
** installing vignettes
   'fragmentmatching.Rmd' using 'UTF-8' 
   'synapter.Rmd' using 'UTF-8' 
   'synapter2.Rmd' using 'UTF-8' 
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'synapter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synapter' as synapter_2.4.1.zip
* DONE (synapter)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'synapter' successfully unpacked and MD5 sums checked
In R CMD INSTALL