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INSTALL report for splicegear on tokay2

This page was generated on 2018-10-17 08:31:53 -0400 (Wed, 17 Oct 2018).

Package 1413/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
splicegear 1.52.0
Laurent Gautier
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/splicegear
Branch: RELEASE_3_7
Last Commit: 3066d1b
Last Changed Date: 2018-04-30 10:34:57 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: splicegear
Version: 1.52.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/splicegear_1.52.0.tar.gz && rm -rf splicegear.buildbin-libdir && mkdir splicegear.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splicegear.buildbin-libdir splicegear_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL splicegear_1.52.0.zip && rm splicegear_1.52.0.tar.gz splicegear_1.52.0.zip
StartedAt: 2018-10-16 18:56:01 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:57:10 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 69.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/splicegear_1.52.0.tar.gz && rm -rf splicegear.buildbin-libdir && mkdir splicegear.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splicegear.buildbin-libdir splicegear_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL splicegear_1.52.0.zip && rm splicegear_1.52.0.tar.gz splicegear_1.52.0.zip
###
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install for i386

* installing *source* package 'splicegear' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'splicegear'
    finding HTML links ... done
    Probes-class                            html  
    SpliceExprSet-class                     html  
    SpliceSites-class                       html  
    SpliceSitesGenomic-class                html  
    as.data.frame.SpliceExprSet             html  
    barplot.SpliceSites                     html  
    buildSpliceSites                        html  
    getRelSignStrength                      html  
    grid.helpers                            html  
    grid.plot.SpliceSites                   html  
    isProbeOnSpliceSite                     html  
    matchprobes2Probes                      html  
    plot.SpliceExprSet                      html  
    plot.SpliceSites                        html  
    plot.SpliceSitesGenomic                 html  
    sort.SpliceExprSet                      html  
    spliceset                               html  
    split.SpliceSites                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'splicegear' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'splicegear' as splicegear_1.52.0.zip
* DONE (splicegear)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'splicegear' successfully unpacked and MD5 sums checked
In R CMD INSTALL