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INSTALL report for sincell on tokay2

This page was generated on 2018-10-17 08:39:56 -0400 (Wed, 17 Oct 2018).

Package 1380/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sincell 1.12.0
Miguel Julia , Antonio Rausell
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/sincell
Branch: RELEASE_3_7
Last Commit: d0d422f
Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sincell
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/sincell_1.12.0.tar.gz && rm -rf sincell.buildbin-libdir && mkdir sincell.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sincell.buildbin-libdir sincell_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL sincell_1.12.0.zip && rm sincell_1.12.0.tar.gz sincell_1.12.0.zip
StartedAt: 2018-10-16 18:58:24 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:00:07 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 103.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/sincell_1.12.0.tar.gz && rm -rf sincell.buildbin-libdir && mkdir sincell.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sincell.buildbin-libdir sincell_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL sincell_1.12.0.zip && rm sincell_1.12.0.tar.gz sincell_1.12.0.zip
###
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install for i386

* installing *source* package 'sincell' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pseudoreplicatesbymodel.cpp -o pseudoreplicatesbymodel.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pseudoreplicatesbynoise.cpp -o pseudoreplicatesbynoise.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pseudoreplicatesbynoise_cv2.cpp -o pseudoreplicatesbynoise_cv2.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c sstalgorithm.cpp -o sstalgorithm.o
sstalgorithm.cpp: In function 'Rcpp::NumericVector sstalgorithm(Rcpp::NumericVector, int, Rcpp::NumericMatrix)':
sstalgorithm.cpp:28:17: warning: 'disty' may be used uninitialized in this function [-Wmaybe-uninitialized]
   out[2] = disty;
                 ^
sstalgorithm.cpp:27:17: warning: 'distx' may be used uninitialized in this function [-Wmaybe-uninitialized]
   out[1] = distx;
                 ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o sincell.dll tmp.def RcppExports.o pseudoreplicatesbymodel.o pseudoreplicatesbynoise.o pseudoreplicatesbynoise_cv2.o sstalgorithm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/sincell.buildbin-libdir/sincell/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sincell'
    finding HTML links ... done
    ExpressionMatrix                        html  
    f_distance2vector                       html  
    geneset.list                            html  
    knnalgorithm                            html  
    pseudoreplicatesbymodel                 html  
    pseudoreplicatesbynoise                 html  
    pseudoreplicatesbynoise_cv2             html  
    sc_AssociationOfCellsHierarchyWithAGeneSet
                                            html  
    sc_ComparissonOfGraphs                  html  
    sc_DimensionalityReductionObj           html  
    sc_GraphBuilderObj                      html  
    sc_InSilicoCellsReplicatesObj           html  
    sc_InitializingSincellObject            html  
    sc_StatisticalSupportByGeneSubsampling
                                            html  
    sc_StatisticalSupportByReplacementWithInSilicoCellsReplicates
                                            html  
    sc_clusterObj                           html  
    sc_distanceObj                          html  
    sc_marker2color                         html  
    sstalgorithm                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'sincell' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pseudoreplicatesbymodel.cpp -o pseudoreplicatesbymodel.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pseudoreplicatesbynoise.cpp -o pseudoreplicatesbynoise.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pseudoreplicatesbynoise_cv2.cpp -o pseudoreplicatesbynoise_cv2.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c sstalgorithm.cpp -o sstalgorithm.o
sstalgorithm.cpp: In function 'Rcpp::NumericVector sstalgorithm(Rcpp::NumericVector, int, Rcpp::NumericMatrix)':
sstalgorithm.cpp:28:17: warning: 'disty' may be used uninitialized in this function [-Wmaybe-uninitialized]
   out[2] = disty;
                 ^
sstalgorithm.cpp:27:17: warning: 'distx' may be used uninitialized in this function [-Wmaybe-uninitialized]
   out[1] = distx;
                 ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o sincell.dll tmp.def RcppExports.o pseudoreplicatesbymodel.o pseudoreplicatesbynoise.o pseudoreplicatesbynoise_cv2.o sstalgorithm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/sincell.buildbin-libdir/sincell/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sincell' as sincell_1.12.0.zip
* DONE (sincell)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'sincell' successfully unpacked and MD5 sums checked
In R CMD INSTALL