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INSTALL report for sigsquared on tokay2

This page was generated on 2018-10-17 08:40:01 -0400 (Wed, 17 Oct 2018).

Package 1372/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sigsquared 1.12.0
UnJin Lee
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/sigsquared
Branch: RELEASE_3_7
Last Commit: c5c25d1
Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sigsquared
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/sigsquared_1.12.0.tar.gz && rm -rf sigsquared.buildbin-libdir && mkdir sigsquared.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sigsquared.buildbin-libdir sigsquared_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL sigsquared_1.12.0.zip && rm sigsquared_1.12.0.tar.gz sigsquared_1.12.0.zip
StartedAt: 2018-10-16 19:10:11 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:10:38 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 26.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/sigsquared_1.12.0.tar.gz && rm -rf sigsquared.buildbin-libdir && mkdir sigsquared.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sigsquared.buildbin-libdir sigsquared_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL sigsquared_1.12.0.zip && rm sigsquared_1.12.0.tar.gz sigsquared_1.12.0.zip
###
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install for i386

* installing *source* package 'sigsquared' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'ensembleCostFcn' with signature 'dataSet="ExpressionSet",geneSig="geneSignature",jpdf="solnSpace"': no definition for class "solnSpace"
in method for 'getCVCuts' with signature 'cutoffResults="solnSpace"': no definition for class "solnSpace"
in method for 'summarizeCVCuts' with signature 'cutoffResults="solnSpace"': no definition for class "solnSpace"
** help
*** installing help indices
  converting help for package 'sigsquared'
    finding HTML links ... done
    BrCa443                                 html  
    analysisPipeline                        html  
    ensembleAdjustable                      html  
    geneSignature-class                     html  
    setGeneSignature                        html  
    sigsquared                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'sigsquared' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sigsquared' as sigsquared_1.12.0.zip
* DONE (sigsquared)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'sigsquared' successfully unpacked and MD5 sums checked
In R CMD INSTALL