Joseph R Boyd
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/seqsetvis |
| Branch: RELEASE_3_7 |
| Last Commit: 30638fd |
| Last Changed Date: 2018-05-25 14:53:05 -0400 (Fri, 25 May 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:45:35 -0400 (Wed, 17 Oct 2018).
| Package 1352/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| seqsetvis 1.0.2 Joseph R Boyd
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: seqsetvis |
| Version: 1.0.2 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:seqsetvis.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings seqsetvis_1.0.2.tar.gz |
| StartedAt: 2018-10-17 04:47:16 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 04:55:38 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 501.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: seqsetvis.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:seqsetvis.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings seqsetvis_1.0.2.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/seqsetvis.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seqsetvis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seqsetvis' version '1.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seqsetvis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ssvSignalBandedQuantiles 9.36 0.1 9.39
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ssvSignalBandedQuantiles 9.50 0.03 9.54
ssvSignalLineplot 6.58 0.00 6.58
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
seqsetvis.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/seqsetvis_1.0.2.tar.gz && rm -rf seqsetvis.buildbin-libdir && mkdir seqsetvis.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqsetvis.buildbin-libdir seqsetvis_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL seqsetvis_1.0.2.zip && rm seqsetvis_1.0.2.tar.gz seqsetvis_1.0.2.zip
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install for i386
* installing *source* package 'seqsetvis' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'seqsetvis'
finding HTML links ... done
CTCF_in_10a_bigWig_urls html
CTCF_in_10a_data html
CTCF_in_10a_narrowPeak_grs html
CTCF_in_10a_narrowPeak_urls html
CTCF_in_10a_overlaps_gr html
CTCF_in_10a_profiles_dt html
CTCF_in_10a_profiles_gr html
applySpline html
centerAtMax html
centerFixedSizeGRanges html
chromHMM_demo_bw_states_gr html
chromHMM_demo_chain_url html
chromHMM_demo_data html
chromHMM_demo_overlaps_gr html
chromHMM_demo_segmentation_url html
chromHMM_demo_state_colors html
chromHMM_demo_state_total_widths html
clusteringKmeans html
clusteringKmeansNestedHclust html
col2hex html
easyLoad_bed html
easyLoad_broadPeak html
easyLoad_narrowPeak html
fetchBam html
fixGRangesWidth html
fragLen_calcStranded html
fragLen_fromMacs2Xls html
ggellipse html
prepare_fetch_GRanges html
quantileGRangesWidth html
safeBrew html
seqsetvis-package html
setGRangesWidth html
set_list2memb html
shift_anchor html
ssvFactorizeMembTable html
ssvFeatureBars html
ssvFeatureBinaryHeatmap html
ssvFeatureEuler html
ssvFeaturePie html
ssvFeatureVenn html
ssvFetchBam html
ssvFetchBam.single html
ssvFetchBigwig html
ssvFetchBigwig.single html
ssvFetchSignal html
ssvMakeMembTable-methods html
ssvOverlapIntervalSets html
ssvSignalBandedQuantiles html
ssvSignalClustering html
ssvSignalHeatmap html
ssvSignalLineplot html
ssvSignalLineplotAgg html
ssvSignalScatterplot html
viewGRangesWinSample_dt html
viewGRangesWinSummary_dt html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'seqsetvis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqsetvis' as seqsetvis_1.0.2.zip
* DONE (seqsetvis)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'seqsetvis' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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seqsetvis.Rcheck/tests_i386/testthat.Rout R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > ## load dependencies > library(testthat) > library(seqsetvis) Loading required package: ggplot2 > library(data.table) > > ## test package > test_check(package = "seqsetvis") == testthat results =========================================================== OK: 426 SKIPPED: 24 FAILED: 0 > > proc.time() user system elapsed 77.07 1.81 79.51 |
seqsetvis.Rcheck/tests_x64/testthat.Rout R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > ## load dependencies > library(testthat) > library(seqsetvis) Loading required package: ggplot2 > library(data.table) > > ## test package > test_check(package = "seqsetvis") == testthat results =========================================================== OK: 426 SKIPPED: 24 FAILED: 0 > > proc.time() user system elapsed 80.73 0.82 81.46 |
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seqsetvis.Rcheck/examples_i386/seqsetvis-Ex.timings
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seqsetvis.Rcheck/examples_x64/seqsetvis-Ex.timings
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